View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5381_low_8 (Length: 452)

Name: NF5381_low_8
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5381_low_8
NF5381_low_8
[»] chr5 (2 HSPs)
chr5 (1-444)||(8181207-8181649)
chr5 (266-313)||(9260620-9260667)
[»] chr1 (5 HSPs)
chr1 (289-386)||(40980836-40980934)
chr1 (266-313)||(29394053-29394100)
chr1 (266-313)||(30402898-30402945)
chr1 (266-313)||(30409455-30409502)
chr1 (279-313)||(35163367-35163401)
[»] chr2 (2 HSPs)
chr2 (289-386)||(26450426-26450524)
chr2 (1-72)||(17834512-17834583)
[»] chr7 (2 HSPs)
chr7 (289-386)||(1972899-1972998)
chr7 (266-313)||(13947989-13948036)
[»] chr8 (2 HSPs)
chr8 (266-313)||(11144109-11144156)
chr8 (266-300)||(44552136-44552170)
[»] chr3 (1 HSPs)
chr3 (266-313)||(55040127-55040174)
[»] chr6 (1 HSPs)
chr6 (266-300)||(32446116-32446150)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 8181649 - 8181207
Alignment:
Q  1 aatttgtgaattttgattagaagnnnnnnnggacagattttagtgttttcgttgcattgggtttcatgtattttactattgatatattgttcttctaggt 100  Q
    |||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181649 aatttgtgaattttgattagaagtttttttggaccgattttagtgttttcgttgcattgggtttcatgtattttactattgatatattgttcttctaggt 8181550  T
Q  101 tcacttttgattctattgcgtgcagcaaattcttatagagattgagagcggagagtaaaaattagagtcaagataattaaacaccatgaggtaattttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181549 tcacttttgattctattgcgtgcagcaaattcttatagagattgagagcggagagtaaaaattagagtcaagataattaaacaccatgaggtaattttat 8181450  T
Q  201 cttacgttttttagatatgtttttgatctatgatatttatttcatctaatatgattatcagtaacttatagggttctgatgttgtttatagctcactggt 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181449 ctt-cgttttttagatatgtttttgatctatgatatttatttcatctaatatgattatcagtaacttatagggttctgatgttgtttatagctcactggt 8181351  T
Q  301 gtcctatttaatgtataccttagcctcatttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggtatactgctgttacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8181350 gtcctatttaatgtataccttagcctcatttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggtattctgctgttacg 8181251  T
Q  401 aggttttcctttcaatgctattttccctctgtatcgtgctattc 444  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  8181250 aggttttcctttcaatgctattttccctctgtgtcgtgctattc 8181207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 9260667 - 9260620
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  9260667 ttataggatcctgatgttgtttatagctcactggtgtcctatttaatg 9260620  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 40980934 - 40980836
Alignment:
Q  289 tagctcactggtgtcctatttaatgtataccttagcctcat-ttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 386  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  40980934 tagctcactggtgtcctatttaatgtataccttagcctcattttttgtgtggaaagatgcagttctttagggggcgcctctttgtggttatttaaaggt 40980836  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 29394100 - 29394053
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||| | |||||||||||||||||||| ||||||||| |||||||    
T  29394100 ttataggatcctgatgttgtttatagctcagtggtgtcctttttaatg 29394053  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 30402945 - 30402898
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||| | |||||||||||||||||||||||||||| | |||||||    
T  30402945 ttataggatcctgatgttgtttatagctcactggtgtcttttttaatg 30402898  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 30409502 - 30409455
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||| | |||||||||||||||||||||||||||| | |||||||    
T  30409502 ttataggatcctgatgttgtttatagctcactggtgtcttttttaatg 30409455  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 35163367 - 35163401
Alignment:
Q  279 atgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||||||||||||||||||||||| |||||||    
T  35163367 atgttgtttatagctcactggtgtcctttttaatg 35163401  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 26450426 - 26450524
Alignment:
Q  289 tagctcactggtgtcctatttaatgtataccttagcctcattttta-tgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 386  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  ||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  26450426 tagctcagtggtgtcctatttaatgtatactttagcctcattttttgtgtggaaagatgcagttctttagggggcgcctctttgtggttatttaaaggt 26450524  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17834512 - 17834583
Alignment:
Q  1 aatttgtgaattttgattagaagnnnnnnnggacagattttagtgttttcgttgcattgggtttcatgtatt 72  Q
    ||||||||||||||||||||||        ||| |||| ||| |||||||||||||||||||||||||||||    
T  17834512 aatttgtgaattttgattagaattttttttggaaagatattattgttttcgttgcattgggtttcatgtatt 17834583  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 1972899 - 1972998
Alignment:
Q  289 tagctcactggtgtcctatttaatgtataccttagcctca--tttttatgtggaatgatgcagatctatagggggcgcctctttgtggttatttagaggt 386  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||| || ||| |||||||| ||||||| |||||||||| ||||    
T  1972899 tagctcactggtgtcctatttaatgtataccttagcctcatttttttgtgtggaaagatgtagttctttagggggcacctctttttggttatttaaaggt 1972998  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 13947989 - 13948036
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  13947989 ttataggatcctgatgttgtttatagctcactggtgtcctttttaatg 13948036  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 11144109 - 11144156
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  11144109 ttataggatcctgatgttgtttatagctcactggtgtcctttttaatg 11144156  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 44552136 - 44552170
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggt 300  Q
    ||||||||| |||||||||||||||||||||||||    
T  44552136 ttatagggtcctgatgttgtttatagctcactggt 44552170  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 55040174 - 55040127
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggtgtcctatttaatg 313  Q
    ||||||| | |||| ||||||||||||||||||||||||| |||||||    
T  55040174 ttataggatcctgacgttgtttatagctcactggtgtcctttttaatg 55040127  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 300
Target Start/End: Original strand, 32446116 - 32446150
Alignment:
Q  266 ttatagggttctgatgttgtttatagctcactggt 300  Q
    |||||||||||||||||||||||||||| ||||||    
T  32446116 ttatagggttctgatgttgtttatagcttactggt 32446150  T

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