View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5381_low_9 (Length: 426)

Name: NF5381_low_9
Description: NF5381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5381_low_9
NF5381_low_9
[»] chr5 (12 HSPs)
chr5 (1-405)||(36961951-36962355)
chr5 (1-405)||(42764965-42765369)
chr5 (174-405)||(11619148-11619379)
chr5 (176-405)||(20705977-20706206)
chr5 (200-405)||(13065447-13065652)
chr5 (199-402)||(20587521-20587724)
chr5 (200-370)||(19609167-19609337)
chr5 (200-405)||(8724595-8724800)
chr5 (174-367)||(18521645-18521837)
chr5 (176-304)||(31291575-31291703)
chr5 (323-370)||(21708484-21708531)
chr5 (321-366)||(13559983-13560028)
[»] chr2 (10 HSPs)
chr2 (1-405)||(20470862-20471266)
chr2 (1-405)||(27072048-27072452)
chr2 (48-402)||(21084977-21085331)
chr2 (69-405)||(34071341-34071676)
chr2 (200-405)||(31426334-31426539)
chr2 (174-367)||(18777135-18777328)
chr2 (186-370)||(7861474-7861654)
chr2 (323-370)||(33845703-33845750)
chr2 (336-370)||(17102783-17102817)
chr2 (336-370)||(32019517-32019551)
[»] chr1 (17 HSPs)
chr1 (1-404)||(22161437-22161840)
chr1 (174-405)||(27527149-27527385)
chr1 (9-405)||(38532682-38533078)
chr1 (177-367)||(21182499-21182690)
chr1 (181-402)||(11644615-11644836)
chr1 (6-405)||(25594802-25595201)
chr1 (200-405)||(4179856-4180061)
chr1 (174-367)||(29600867-29601060)
chr1 (186-370)||(26418799-26418983)
chr1 (186-370)||(32108297-32108481)
chr1 (318-366)||(11420376-11420424)
chr1 (267-370)||(8860176-8860279)
chr1 (324-371)||(3601274-3601321)
chr1 (336-370)||(17431184-17431218)
chr1 (336-370)||(44002267-44002301)
chr1 (324-364)||(20639601-20639641)
chr1 (323-367)||(28214300-28214344)
[»] chr4 (11 HSPs)
chr4 (2-405)||(17459087-17459490)
chr4 (51-405)||(25552985-25553339)
chr4 (9-405)||(15065599-15065995)
chr4 (198-370)||(47782874-47783046)
chr4 (174-365)||(20089074-20089265)
chr4 (236-370)||(13200761-13200895)
chr4 (246-362)||(13905888-13906004)
chr4 (216-367)||(40686862-40687013)
chr4 (318-370)||(4946704-4946756)
chr4 (323-370)||(46387911-46387958)
chr4 (318-360)||(13543165-13543207)
[»] chr3 (15 HSPs)
chr3 (9-405)||(14504096-14504492)
chr3 (69-405)||(2439244-2439580)
chr3 (51-405)||(8968363-8968717)
chr3 (199-405)||(9734427-9734633)
chr3 (174-405)||(34934948-34935179)
chr3 (174-405)||(2651784-2652015)
chr3 (200-405)||(15789928-15790133)
chr3 (239-403)||(26307299-26307463)
chr3 (266-370)||(32073618-32073722)
chr3 (242-365)||(13434480-13434603)
chr3 (318-367)||(29704653-29704702)
chr3 (323-363)||(48052386-48052426)
chr3 (321-370)||(10980975-10981024)
chr3 (323-372)||(37796615-37796664)
chr3 (323-371)||(38998917-38998965)
[»] chr7 (19 HSPs)
chr7 (9-405)||(5609486-5609882)
chr7 (176-405)||(33972945-33973175)
chr7 (69-405)||(21824131-21824467)
chr7 (174-405)||(13783730-13783961)
chr7 (199-405)||(27244028-27244234)
chr7 (177-405)||(5086457-5086685)
chr7 (174-359)||(32535005-32535192)
chr7 (186-370)||(29526699-29526883)
chr7 (176-367)||(19017042-19017233)
chr7 (174-367)||(665004-665197)
chr7 (186-370)||(7097431-7097615)
chr7 (204-405)||(21588127-21588328)
chr7 (186-355)||(15455676-15455845)
chr7 (316-373)||(39969998-39970055)
chr7 (336-370)||(6621369-6621403)
chr7 (318-360)||(9678221-9678263)
chr7 (336-370)||(15846923-15846957)
chr7 (336-370)||(15856133-15856167)
chr7 (336-370)||(36308020-36308054)
[»] scaffold0445 (1 HSPs)
scaffold0445 (199-405)||(13998-14206)
[»] scaffold0388 (1 HSPs)
scaffold0388 (174-402)||(14434-14661)
[»] chr8 (9 HSPs)
chr8 (174-405)||(28161933-28162164)
chr8 (174-405)||(25732316-25732547)
chr8 (147-367)||(3989354-3989574)
chr8 (174-367)||(7995044-7995237)
chr8 (200-365)||(12784113-12784275)
chr8 (200-364)||(25133057-25133221)
chr8 (323-367)||(39533709-39533753)
chr8 (336-370)||(14848428-14848462)
chr8 (318-366)||(12247058-12247106)
[»] scaffold1689 (1 HSPs)
scaffold1689 (199-403)||(797-1001)
[»] scaffold0114 (1 HSPs)
scaffold0114 (174-405)||(11509-11740)
[»] chr6 (17 HSPs)
chr6 (200-402)||(11986100-11986302)
chr6 (174-405)||(10516013-10516244)
chr6 (200-405)||(21698595-21698800)
chr6 (175-361)||(7090441-7090627)
chr6 (186-370)||(15950671-15950855)
chr6 (260-405)||(1638245-1638390)
chr6 (260-405)||(1641273-1641417)
chr6 (200-370)||(30063677-30063847)
chr6 (186-370)||(13434224-13434408)
chr6 (198-345)||(23631469-23631616)
chr6 (71-222)||(15923709-15923860)
chr6 (318-355)||(30148023-30148060)
chr6 (336-370)||(17812263-17812297)
chr6 (336-370)||(33132290-33132324)
chr6 (318-370)||(6047326-6047377)
chr6 (323-371)||(19047097-19047145)
chr6 (204-304)||(33169432-33169532)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-405)||(234690-235086)
[»] scaffold0251 (1 HSPs)
scaffold0251 (200-405)||(2213-2418)
[»] scaffold0071 (1 HSPs)
scaffold0071 (186-366)||(52547-52727)
[»] scaffold0068 (1 HSPs)
scaffold0068 (323-370)||(5379-5426)
[»] scaffold0044 (1 HSPs)
scaffold0044 (323-370)||(11031-11078)


Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 36962355 - 36961951
Alignment:
Q  1 ctggaaggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||    
T  36962355 ctggaaggtataagtgcaatgttgatgcatcctttccaagtgattccaacaaggtcggcctgggaatttgcatccgggactcagaagggaaccatgtacg 36962256  T
Q  101 ctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaaca 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||||||    
T  36962255 ctccaaaattatgagtttttctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcaataaggtggatacaagaacttcaattaaca 36962156  T
Q  201 aatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatcc 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  36962155 aatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcaccgaattcggctccattatggataagagtatcc 36962056  T
Q  301 aattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtac 400  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36962055 aatggtgtcacagttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtac 36961956  T
Q  401 tagct 405  Q
    |||||    
T  36961955 tagct 36961951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 42764965 - 42765369
Alignment:
Q  1 ctggaaggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || || || |||||||||||||||||||||||    
T  42764965 ctggaaggtataagtgcaatgttgatgcatcctttccaagtgattccaacaaggtcggtctgggaatttgtatccgggactcagaagggaaccatgtacg 42765064  T
Q  101 ctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaaca 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||||||    
T  42765065 ctccaaaattatgagtttttctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcaataaggtggatacaagaacttcaattaaca 42765164  T
Q  201 aatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatcc 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||    
T  42765165 aatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcatcgaattcggctccattatggataagagtatcc 42765264  T
Q  301 aattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtac 400  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42765265 aatggtgtcacaattacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccacatctagtac 42765364  T
Q  401 tagct 405  Q
    |||||    
T  42765365 tagct 42765369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 174 - 405
Target Start/End: Complemental strand, 11619379 - 11619148
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    |||||||||||||| |||||  |  |||||||||| ||||||||||||||||||||||| || ||||||||||||||||| | ||||||| |||||||||    
T  11619379 cggtggatacaagagcttcaactttcaaatgttgacttcgaggttgactctaaaagagtagccgattatttcaacaaaggtcgtggagatgtcaccgaat 11619280  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    ||||||| ||| ||||||  | ||||||||| |||   | ||| ||||||||||||||||| |||||||||||||||||| | ||||||||||| ||  |    
T  11619279 ttggttctattgtggatagcaatatccaattatgtagaaattatttaacaaactctcatgtcgagtttattaggaggcaaacgaatgaggttgcgcatgc 11619180  T
Q  374 tctagccaaggcagccgcatctagtactagct 405  Q
      |||  ||||||||| |||||||||||||||    
T  11619179 attagttaaggcagccacatctagtactagct 11619148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 176 - 405
Target Start/End: Original strand, 20705977 - 20706206
Alignment:
Q  176 gtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaattt 275  Q
    ||||||||| ||||||||  |  ||||||||||||||||||| |||||||||||||| |||| |||||||||||| || | ||||||| ||||||| ||     
T  20705977 gtggatacatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagagtagctggttatttcaacaatggtcgtggagatgtcaccgagttc 20706076  T
Q  276 ggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactc 375  Q
    || || || |||||||  ||| ||||||| ||| |||   | ||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||  ||     
T  20706077 ggctctatcatggatagtagtgtccaattctgtaacaccaatttatcaaactctcatgtcgagtttattagaaggcaagcaaatgaggttgcacatgctt 20706176  T
Q  376 tagccaaggcagccgcatctagtactagct 405  Q
    |||| ||||||||| |||||||||||||||    
T  20706177 tagctaaggcagccacatctagtactagct 20706206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 200 - 405
Target Start/End: Complemental strand, 13065652 - 13065447
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || |||||||| ||| |||| || ||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| |  || |||    
T  13065652 aaatgttgattttgaagttgactcgaaacgagtagcggattatttcaacaaaggcagtggagatgtcaccgaatttggttccataatggacagtagcatc 13065553  T
Q  300 caattgtgtca--catttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctag 397  Q
    || || ||||   |||||  ||||||||||||||||| ||||||| |||||||||||| ||||||||||| || |||||||| ||||||||| |||||||    
T  13065552 catttctgtcggtcattt--ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcacatactctagctaaggcagccacatctag 13065455  T
Q  398 tactagct 405  Q
    | ||||||    
T  13065454 ttctagct 13065447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 199 - 402
Target Start/End: Original strand, 20587521 - 20587724
Alignment:
Q  199 caaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtat 298  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| || | ||||||| ||||||| || || || || |||||||  ||| |    
T  20587521 caaatgttgatttcgaggtagactctaaaagagtagctgattatttcaacaatggtcgtggagatgtcaccgagttcggctctatcatggatagtagtgt 20587620  T
Q  299 ccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagt 398  Q
    |||||| ||| |||   | ||| ||||||||||||| ||||||||||||||| ||| |||||||||||| ||  || |||| ||||||||| ||||||||    
T  20587621 ccaattctgtaacaccaatttatcaaactctcatgtcgagtttattaggaggtaagaaaatgaggttgcacatgctttagctaaggcagccacatctagt 20587720  T
Q  399 acta 402  Q
    ||||    
T  20587721 acta 20587724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 200 - 370
Target Start/End: Complemental strand, 19609337 - 19609167
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || |||||||| |||||||| ||||||||||||||||| || | ||||||| |||| |||||||| || |||||||| |  | | ||    
T  19609337 aaatgttgattttgaagttgactcaaaaagagtagctgattatttcaacaatggtcgtggagatgtcactgaatttggctctattatggacagtaatgtc 19609238  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||| ||  | | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19609237 caattctgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctca 19609167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 405
Target Start/End: Original strand, 8724595 - 8724800
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || |||||||| ||| |||| || ||||||||||||||||| | ||||||| |||||||||||||||| || ||||| |  || ||     
T  8724595 aaatgttgattttgaagttgactcgaaacgagtagcagattatttcaacaaaggtcgtggagatgtcaccgaatttggttctataatggacagtagcatt 8724694  T
Q  300 caattgtgtca--catttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctag 397  Q
    || || ||||   || ||  ||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | |||||| ||||||||| |||||||    
T  8724695 catttctgtcggtcactt--ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcacataatctagctaaggcagccacatctag 8724792  T
Q  398 tactagct 405  Q
    | ||||||    
T  8724793 ttctagct 8724800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 18521645 - 18521837
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    |||||| |||| | ||||||| | ||||||||||| || |||||||| |  |||| ||| ||| ||||||||||||||||    ||||||||||| ||||    
T  18521645 cggtgggtacatggacttcagctcacaaatgttgactttgaggttgattagaaaaaagtagctaattatttcaacaaaggttgaggagatatcactgaat 18521744  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||||||| |||||  |||  ||||||||||| ||| |    || |||||||| ||||||||  |||||||||  ||||||||||||||||||||    
T  18521745 ttggttc-attataaatagtagtatccaattctgtaatccctatttaacaaattctcatgtgaagtttattacaaggcaagcaaatgaggttgc 18521837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 31291575 - 31291703
Alignment:
Q  176 gtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaattt 275  Q
    ||||||||| ||||||||| | |||||||||||||| |||||||| |  |||| ||| | ||||||||| || | |||    |||||||||||||| |||    
T  31291575 gtggatacatgaacttcagctcacaaatgttgattttgaggttgaattgaaaaaagtagttgattattttaatagaggtaggggagatatcaccgagttt 31291674  T
Q  276 ggttccattatggataagagtatccaatt 304  Q
    |||||||| |||||||| |||||||||||    
T  31291675 ggttccatcatggataatagtatccaatt 31291703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 21708484 - 21708531
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  21708484 aaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctca 21708531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 13559983 - 13560028
Alignment:
Q  321 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttg 366  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||    
T  13559983 acaaactctaatgttgagtttattaggaggcaagtcaatgaggttg 13560028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 20470862 - 20471266
Alignment:
Q  1 ctggaaggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  20470862 ctggaaggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcgggctgggaatctgcatccgagactcagaagggaaccatgtacg 20470961  T
Q  101 ctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaaca 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  ||||     
T  20470962 ctccaaaattatgagtttctctccagtctgctcggtagacgtaggagaagctttgggtttataccatgcactacggtggatacaagaacttcaactaact 20471061  T
Q  201 aatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatcc 300  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  20471062 aatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaaaggccatggagatatcaccgaattcggttccattatggataatagtatcc 20471161  T
Q  301 aattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtac 400  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  20471162 aattgtgtcacatttacttaacaaactctcatgtagagtttattaggaggcaagcaaatgaggttgctcatactctagctaaggcagccgcatctagtac 20471261  T
Q  401 tagct 405  Q
    |||||    
T  20471262 tagct 20471266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 27072048 - 27072452
Alignment:
Q  1 ctggaaggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||||||||||||||||||    
T  27072048 ctggaaggtataagtgcaatgttgatgcatcctttccaagtgattccaacaaggtcggcctgggaatttgcatccgggactcagaagggaaccatgtacg 27072147  T
Q  101 ctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaaca 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||  |||||    
T  27072148 ctccaaaattatgagtttttctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcaataaggtggatacaagaacttcaaataaca 27072247  T
Q  201 aatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatcc 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27072248 aatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcaccgaattcggctccattatggataagagtatcc 27072347  T
Q  301 aattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtac 400  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27072348 aatggtgtcacagttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtac 27072447  T
Q  401 tagct 405  Q
    |||||    
T  27072448 tagct 27072452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 48 - 402
Target Start/End: Complemental strand, 21085331 - 21084977
Alignment:
Q  48 aacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaattatgagtttctctccagtttgctcggtagacgtaggag 147  Q
    |||||||| ||||| || || |||||||||||||| || ||||| ||| | || || |||| |||| | ||  ||||||||||||| || || || || |    
T  21085331 aacaaggtaggtcttggtatgtgcattcgagactctgatgggaatcattttcgttctaaaactatgtggtttactccagtttgctctgtggatgttgggg 21085232  T
Q  148 aagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaa 247  Q
    | ||| ||   ||||| || ||| | |||||||| || ||||||||  |  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21085231 aggctctgacattatatcacgcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaa 21085132  T
Q  248 caaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattagg 347  Q
    ||| || | ||||||| ||||||| || ||||| ||||||||||  ||| ||||||| ||| |||   | ||| ||||||||||||| ||||||||||||    
T  21085131 caatggtcgtggagatgtcaccgagttcggttctattatggatagtagtgtccaattttgtaacacaaatttatcaaactctcatgtcgagtttattagg 21085032  T
Q  348 aggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtacta 402  Q
    |||||||||||||||||||| ||  || |||| ||||||||| ||||||||||||    
T  21085031 aggcaagcaaatgaggttgcacatgctttagctaaggcagccacatctagtacta 21084977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 69 - 405
Target Start/End: Complemental strand, 34071676 - 34071341
Alignment:
Q  69 tgcattcgagactcagaagggaaccatgtacgctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaag 168  Q
    ||||| ||||||||||| |||||||||||  |||| |||||||||  ||||||||||   || ||  | ||||| || || ||  |||||||| | || |    
T  34071676 tgcatccgagactcagatgggaaccatgtctgctctaaaattatgtttttctctccaacctgttctattgacgttggggaggccctgggtttacatcatg 34071577  T
Q  169 cgctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcac 268  Q
    |  | |||||||| || ||||||||  | || |||||||||||||||||||||||||||||||| |||||||| |||||||| ||    |||||| ||||    
T  34071576 caattcggtggattcatgaacttcaactcactaatgttgatttcgaggttgactctaaaagagtagctgattacttcaacaatggttg-ggagatgtcac 34071478  T
Q  269 cgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgct 368  Q
    |||||||||||| ||||| ||||   ||||||| || ||| |||  || ||||||||||||||||| || |||||||||| |||| | |||||||||||     
T  34071477 cgaatttggttcaattatagatagtggtatccacttttgtaacacctatttaacaaactctcatgtcgaatttattaggaagcaaacgaatgaggttgca 34071378  T
Q  369 cacactctagccaaggcagccgcatctagtactagct 405  Q
    |||||| |||| ||||||||| |||||||| ||||||    
T  34071377 cacactttagctaaggcagccacatctagttctagct 34071341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 405
Target Start/End: Original strand, 31426334 - 31426539
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || || ||||| |||||||| ||||||||||||||||| || | ||||||| ||||||||||||| || |||||||| |  ||| ||    
T  31426334 aaatgttgattttgaagtggactcaaaaagagtagctgattatttcaacaatggtcgtggagatgtcaccgaatttggctctattatggacagtagtgtc 31426433  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagta 399  Q
    ||||| ||  | | ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||   | || | || |||||| |||||||||    
T  31426434 caattctgcaataattatttaacaaactctcatgtcgagtttattaagaggcaagcaaatgaggttgctcatgttttaactaaagcagccacatctagta 31426533  T
Q  400 ctagct 405  Q
    ||||||    
T  31426534 ctagct 31426539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 18777135 - 18777328
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatgg-agatatcaccgaa 272  Q
    |||||||| || || ||| |||| ||||||||||||||||||||||| || |||| ||| ||||||||||||||  || || | || ||||||||  |||    
T  18777135 cggtggatccatgaccttaagttcacaaatgttgatttcgaggttgattcgaaaaaagtagctgattatttcaa-taatgcaagggaagatatcattgaa 18777233  T
Q  273 tttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    | ||| |||||||||||||  ||||||| ||  ||| ||  |||  ||| |||||||  |||| ||||||||||||||||||||||  |||||||    
T  18777234 tgtggatccattatggatagtagtatcctatattgtaactcttatgtaagaaactcttgtgttaagtttattaggaggcaagcaaaccaggttgc 18777328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 370
Target Start/End: Original strand, 7861474 - 7861654
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccatta 285  Q
    ||||||||| | |||||||||||||| ||||| || |  |||| | | ||||||||||| ||||||| |   |||||||  ||| ||||||| |||||||    
T  7861474 gaacttcagctcacaaatgttgattttgaggtagatttgaaaacaatagctgattattttaacaaagccagaggagataataccaaatttggatccatta 7861573  T
Q  286 tggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||| || | |||||| || ||  | || |  ||||||||||||||||||    ||||||||||||||||||||||| |||||||    
T  7861574 tggagaatactatccagttttgcaatatctttttaacaaactctcatgtt----ttattaggaggcaagcaaatgagattgctca 7861654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 33845750 - 33845703
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||| |||||||||| |  |||||||||||||||||||||||||    
T  33845750 aaactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctca 33845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 17102817 - 17102783
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  17102817 gagtttattaggagacaagcaaatgaggttgctca 17102783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 32019551 - 32019517
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  32019551 gagtttattaggagacaagcaaatgaggttgctca 32019517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 22161437 - 22161840
Alignment:
Q  1 ctggaaggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacg 100  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  22161437 ctggaaggtataagtgtaatgttgatgcatattttccaaatgattctaacaaggtaggtctgggaatctgcatccgagactcagaagggaaccatgtacg 22161536  T
Q  101 ctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaaca 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||    
T  22161537 ctccaaaattatgagtttctctccagtttgttcggtagacgtaggagaagctttgggtttataccatgcactacggtggatacaagaacttcaattaaca 22161636  T
Q  201 aatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatcc 300  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||  |||||||    
T  22161637 aatgttgatttcgagattgactctaaaagagtagctgattatttcaacaaaggtcatggagatatcaccaaatttggttctattatggatagtagtatcc 22161736  T
Q  301 aattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtac 400  Q
    |||| ||| | | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||    
T  22161737 aattttgtaatacttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcataatctagctaaggcagccgcatctagtac 22161836  T
Q  401 tagc 404  Q
    ||||    
T  22161837 tagc 22161840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 174 - 405
Target Start/End: Original strand, 27527149 - 27527385
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||||||||||||  | |||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||| ||||||||  |||||||    
T  27527149 cggtggatacaagaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagctgattatttctacaaaggccgtggagatactaccgaat 27527248  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactc-----tcatgttgagtttattaggaggcaagcaaatgaggttgct 368  Q
    ||||||| |||||||| |  |||||  | || | | | | |||||||||||||||     |||||| |||||||||||||||||||| |||||||||||     
T  27527249 ttggttctattatggacagcagtatttacttttctaatacttacttaacaaactctcatgtcatgtcgagtttattaggaggcaagcgaatgaggttgca 27527348  T
Q  369 cacactctagccaaggcagccgcatctagtactagct 405  Q
    || || ||||  | ||||||| |||||||||||||||    
T  27527349 catacactagttagggcagccacatctagtactagct 27527385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 38533078 - 38532682
Alignment:
Q  9 tataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaa 108  Q
    ||||| || ||||||||||||||||||||||   | |||||||| |  ||| | ||||| ||||| || || || || ||||| ||||| || || ||||    
T  38533078 tataaatgcaatgttgatgcatcctttccaaacaactccaacaaagcaggttttgggatgtgcatccgtgattctgatgggaatcatgtccggtctaaaa 38532979  T
Q  109 ttatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttga 208  Q
      |||  |||||||||||| || ||  | || ||||| || ||  ||||| || |||| ||  | ||||||||||||||||||||  | |||||||||||    
T  38532978 ccatgtttttctctccagtctgttctattgatgtaggggaggccatgggtctacaccacgcaattcggtggatacaagaacttcaacttacaaatgttga 38532879  T
Q  209 tttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgt 308  Q
    ||| || ||||||||||| ||||| |||||||||||||||||||| | |||||||   ||||||||||| || |||||||| |  |||||  | || | |    
T  38532878 ttttgaagttgactctaacagagtagctgattatttcaacaaaggtcgtggagatgctaccgaatttggctctattatggacagcagtatttacttttct 38532779  T
Q  309 cacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
     | | ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || || ||||| | || |||| |||||| ||||||||    
T  38532778 aatacttacttaacaaactctcatgtcgagtttattatgaggcaagcgaatgaggttgcacatacactagctagggtagccacatctaatactagct 38532682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 177 - 367
Target Start/End: Original strand, 21182499 - 21182690
Alignment:
Q  177 tggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagtt-gctgattatttcaacaaaggccatggagatatcaccgaattt 275  Q
    |||||||| ||||||||  |  |||||||||| ||| |||||||||| ||||||||| || |||||||||||||||||   ||||||| |||| ||||||    
T  21182499 tggatacatgaacttcaactttcaaatgttgacttcaaggttgactcaaaaagagttagccgattatttcaacaaaggttgtggagatgtcactgaattt 21182598  T
Q  276 ggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||||| ||||||||||  || |||||||| |||  || ||| ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  21182599 ggttctattatggatagtagcatccaattatgtagcacttatttaacaaactctcatgtcgagtttattaggaggcaaacaaatgaggttgc 21182690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 402
Target Start/End: Original strand, 11644615 - 11644836
Alignment:
Q  181 tacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttc 280  Q
    |||| ||||||||  | ||||||||||  ||| |||||||||| |||||||| |||||||||||||||||||| | || |||| |||| || ||||||||    
T  11644615 tacatgaacttcaactcacaaatgttgtgttcaaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtgaagatgtcactgactttggttc 11644714  T
Q  281 cattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagcc 380  Q
     |||||| | |  || ||||| || ||| ||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||| ||||     
T  11644715 tattatgcacagtagcatccatttctgtaacacttatttaacaaactctcatgtcgagtttattaggaggcaaacaaatgaggttgcgcatactttagct 11644814  T
Q  381 aaggcagccgcatctagtacta 402  Q
    ||||||| | |||||| |||||    
T  11644815 aaggcagtcacatctaatacta 11644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 405
Target Start/End: Complemental strand, 25595201 - 25594802
Alignment:
Q  6 aggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctcca 105  Q
    |||||||| |||||||||||||||||||| ||||   | |||||| | || ||| | || || |||||||| || || || ||||| ||||| || || |    
T  25595201 aggtataaatgtaatgttgatgcatccttcccaaacaactccaaccaagtaggttttggaatgtgcattcgtgattccgatgggaatcatgtccggtcta 25595102  T
Q  106 aaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgt 205  Q
    |||  |||| |||||||||||  || ||  | || ||||| || ||  ||||| || | || ||| | ||||||||| | ||||||||  | ||||||||    
T  25595101 aaaccatgattttctctccagcctgttccattgatgtaggggaggccctgggtctacatcacgcgattcggtggatatatgaacttcaacttacaaatgt 25595002  T
Q  206 tgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattg 305  Q
    |||||| || ||||||||||||||||  ||||||||||||||||| || | ||| |||||||||||||||||||| || ||||| |  |||||  | ||     
T  25595001 tgattttgaagttgactctaaaagagcagctgattatttcaacaatggtcgtggtgatatcaccgaatttggttctataatggacagcagtatttacttt 25594902  T
Q  306 tgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
        | |  || ||||||||||||||||| ||||||||||||||||| || ||||||||||| || |||||| | | ||||||| |||||||||||||||    
T  25594901 accaagacctatttaacaaactctcatgtcgagtttattaggaggcaggcgaatgaggttgcacatactctaactagggcagccacatctagtactagct 25594802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 405
Target Start/End: Original strand, 4179856 - 4180061
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || |||||||  |||||||| ||||||||||||||||| || | ||||||| |||| |||||||| || |||||| | |  ||| ||    
T  4179856 aaatgttgattttgaagttgactaaaaaagagtagctgattatttcaacaatggtcgtggagatgtcactgaatttggctctattatgaacagtagtgtc 4179955  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagta 399  Q
    ||||| ||  | | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | || | || |||||| |||||||||    
T  4179956 caattctgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttaactaaagcagccacatctagta 4180055  T
Q  400 ctagct 405  Q
    ||||||    
T  4180056 ctagct 4180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 29600867 - 29601060
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||| ||||||||  |  ||||||||||||||||||| |||||||||||| | ||||||||||||||||| || | ||||||| ||||||| |    
T  29600867 cggtggatacatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagaatagctgattatttcaacaatggtcgtggagatgtcaccgagt 29600966  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    | || || || ||||| |  ||| ||||||| ||| |||   | ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29600967 tcggctctatcatggacagcagtgtccaattctgtaacaccaatttatcaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 29601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 186 - 370
Target Start/End: Complemental strand, 26418983 - 26418799
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccat-ggagatatcaccgaatttggttccatt 284  Q
    ||||||||| | |||||||||||||| ||||| || || |||| ||| ||||||||||||||||| ||| |  ||||||| |||||||||||| ||||||    
T  26418983 gaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa-ggcaagaggagataacaccgaatttgggtccatt 26418885  T
Q  285 atggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||| || | |||||| || ||| | || |  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  26418884 atggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctca 26418799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 186 - 370
Target Start/End: Original strand, 32108297 - 32108481
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccat-ggagatatcaccgaatttggttccatt 284  Q
    ||||||||| | |||||||||||||| ||||| || || |||| ||| ||||||||||||||||| ||| |  ||||||| |||||||||||| ||||||    
T  32108297 gaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa-ggcaagaggagataacaccgaatttgggtccatt 32108395  T
Q  285 atggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||| || | |||||| || ||| | || |  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  32108396 atggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctca 32108481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 11420424 - 11420376
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttg 366  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  11420424 ttaacaaactctcatgtcgagtttattaggaggcaagtaaatgaggttg 11420376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 8860279 - 8860176
Alignment:
Q  267 accgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttg 366  Q
    ||||||||||||  |||||||||| |  ||||||| |||||||| | ||  |||||||||||| ||||  | ||||||||||||||||  |||||||| |    
T  8860279 accgaatttggtgtcattatggatgattgtatccatttgtgtcaaaattctttaacaaactctaatgtcaaatttattaggaggcaagtgaatgaggtcg 8860180  T
Q  367 ctca 370  Q
    ||||    
T  8860179 ctca 8860176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 3601321 - 3601274
Alignment:
Q  324 aactctcatgttgagtttattaggaggcaagcaaatgaggttgctcac 371  Q
    ||||||||||| ||||| | |||||||||||| |||||||||||||||    
T  3601321 aactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcac 3601274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 17431184 - 17431218
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  17431184 gagtttattaggagacaagcaaatgaggttgctca 17431218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 44002267 - 44002301
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  44002267 gagtttattaggagacaagcaaatgaggttgctca 44002301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 20639601 - 20639641
Alignment:
Q  324 aactctcatgttgagtttattaggaggcaagcaaatgaggt 364  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  20639601 aactctcatgttgagttcaataggaggcaagccaatgaggt 20639641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 28214344 - 28214300
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||||||||||||||||||||||||||| ||||  |||| ||||||    
T  28214344 aaactctcatgttgagtttattaggagacaagtgaatgcggttgc 28214300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 405
Target Start/End: Original strand, 17459087 - 17459490
Alignment:
Q  2 tggaaggtataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgc 101  Q
    |||||| ||||||||||||||||||||||||||||||| | |||| ||||| || || || || || || || |||||| |||| ||||| |||||||||    
T  17459087 tggaagatataagtgtaatgttgatgcatcctttccaaataattcaaacaaagtagggcttggaatgtgtatccgagacccagatgggaatcatgtacgc 17459186  T
Q  102 tccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaa 201  Q
    || |||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| |||||||    
T  17459187 tctaaaattatgagtttctctccagtttgtttggtagatgtaggagaggctttgggtttataccatgcacttcggtggatacaagaacttcaattaacaa 17459286  T
Q  202 atgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatcca 301  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||  | ||||||    
T  17459287 atgttgatttcgaggttgactctaaaagagtagttgattatttcaacaaaggtcatggagatatcaccgaatttggttctattatggatagtaatatcca 17459386  T
Q  302 attgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtact 401  Q
     || ||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||   |||||| ||||||||| |||||||||||    
T  17459387 cttttgtaacacttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcacatgttctagcaaaggcagccacatctagtact 17459486  T
Q  402 agct 405  Q
    ||||    
T  17459487 agct 17459490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 51 - 405
Target Start/End: Original strand, 25552985 - 25553339
Alignment:
Q  51 aaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaag 150  Q
    ||||| ||||| || || || ||||||||||| || ||||||||| | || || |||| |||| | ||  ||||||||||||| || || || || ||||    
T  25552985 aaggtgggtcttggtatgtgtattcgagactcggatgggaaccattttcgttctaaaactatgtggtttactccagtttgctctgtggatgttggggaag 25553084  T
Q  151 ctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaa 250  Q
    || | | ||||||||| ||| | |||||||| || ||||||||  |  |||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  25553085 ctcttgctttataccacgcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaa 25553184  T
Q  251 aggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggagg 350  Q
     |||| ||||||| | ||||| || || || || |||||||| ||| ||||||| ||| | |   | |||||||||||||||||||||||||||||||||    
T  25553185 tggccgtggagatgttaccgagttcggctctatcatggataatagtgtccaattctgtaaaaccaatttaacaaactctcatgttgagtttattaggagg 25553284  T
Q  351 caagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
    ||||||||||||||||| ||  || |||| ||||||||| |||||||||||||||    
T  25553285 caagcaaatgaggttgcacatgctttagctaaggcagccacatctagtactagct 25553339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 15065599 - 15065995
Alignment:
Q  9 tataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaa 108  Q
    ||||| || ||||||||||||||||||||||   | |||||||| || ||  | ||||| ||||| ||||| || || ||||| ||||| || || ||||    
T  15065599 tataaatgcaatgttgatgcatcctttccaaacaactccaacaaagtagggtttgggatgtgcatccgagattctgatgggaatcatgtccggtctaaaa 15065698  T
Q  109 ttatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttga 208  Q
      |||  |||||||||||  || ||  | || ||||| || ||  ||||| || |||| ||  | |||||||||| |||||||||  | |||||||||||    
T  15065699 ccatgtttttctctccaggctgttctattgatgtaggggaggccctgggtctacaccacgcaattcggtggatacgagaacttcaacttacaaatgttga 15065798  T
Q  209 tttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgt 308  Q
    ||| || ||||||||||||||||| | |||||||||||||||||||| |||||||   |||||||||||||| |||||||| || |||||  | || | |    
T  15065799 ttttgaagttgactctaaaagagtagttgattatttcaacaaaggccgtggagatgctaccgaatttggttctattatggacaacagtatttacttttct 15065898  T
Q  309 cacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
     | | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || || ||||| | ||||||| |||||||||||||||    
T  15065899 aatacttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcacatacactagctagggcagccacatctagtactagct 15065995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 198 - 370
Target Start/End: Original strand, 47782874 - 47783046
Alignment:
Q  198 acaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagta 297  Q
    |||||||||||||| ||||| || || |||| ||| |||||||||||||||||||     ||||||| |||||||||||| ||||||||||| || |  |    
T  47782874 acaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaaagcaagaggagataacaccgaatttggatccattatggagaatacaa 47782973  T
Q  298 tccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||| || ||| | || |  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  47782974 tccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctca 47783046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 365
Target Start/End: Complemental strand, 20089265 - 20089074
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    |||||||| || ||||||||  |  ||||||||||||| ||||||||||| ||||||||  |||| |||||||||||||  |  |||||| |||||||||    
T  20089265 cggtggattcatgaacttcaacttgcaaatgttgattttgaggttgactcaaaaagagtaactgactatttcaacaaagatcgaggagatgtcaccgaat 20089166  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacat-ttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggtt 365  Q
    |||| |||||||||||||| ||||||||||| || ||  |  || |||| ||||||||||||  ||||||||| ||| |||| ||||||||||    
T  20089165 ttgggtccattatggataatagtatccaattatg-cagttcatatttaataaactctcatgtcaagtttattacgagacaagtaaatgaggtt 20089074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 13200761 - 13200895
Alignment:
Q  236 tgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgtt 335  Q
    ||||||||| |||||| ||   ||||| |||||||||||| | | |||||||||||| |  || || || ||| | || |  |||||||||||||||||     
T  13200761 tgattattttaacaaaagcagaggagacatcaccgaatttagatgcattatggataataacattcagttttgtaatatctttttaacaaactctcatgtc 13200860  T
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||| |||||||||||||||||||||||||||||    
T  13200861 gagttcattaggaggcaagcaaatgaggttgctca 13200895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 13906004 - 13905888
Alignment:
Q  246 aacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtca--catttacttaacaaactctcatgttgagtttat 343  Q
    ||||||||| |  ||||||||||||| ||||| |||||||||||||| |||||||| || ||| |  |||||  |||||| ||||||||||| |||||||    
T  13906004 aacaaaggcaaaagagatatcaccgagtttggctccattatggataaaagtatccagttttgtaattcattt--ttaacatactctcatgttaagtttat 13905907  T
Q  344 taggaggcaagcaaatgag 362  Q
    ||| |||||| ||||||||    
T  13905906 tagaaggcaaacaaatgag 13905888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 367
Target Start/End: Original strand, 40686862 - 40687013
Alignment:
Q  216 gttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtcacattt 315  Q
    ||||| || |||| ||| ||| ||||||| || ||||| |  |||||||| ||| |||||| |||||||| |||||  ||| ||||||| ||| |  | |    
T  40686862 gttgattcgaaaatagtagctaattattttaagaaaggtcgaggagatataaccaaatttgcttccattaaggatagtagtgtccaattatgtaatttct 40686961  T
Q  316 acttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    | ||||||||||||||||| ||||||||| |||| ||| |||||||||||||    
T  40686962 atttaacaaactctcatgtggagtttattgggagacaaacaaatgaggttgc 40687013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 4946756 - 4946704
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  4946756 ttaacaaattctcatatcgagtttattaggaggcaagcaaatgaggttgctca 4946704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 46387958 - 46387911
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||| |||||||||| |  |||||||||||||||||||||||||    
T  46387958 aaactctcgtgttgagtttgtatggaggcaagcaaatgaggttgctca 46387911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 13543207 - 13543165
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagcaaatg 360  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||    
T  13543207 ttaacaaattctcatgttgagtttattaggagacaaacaaatg 13543165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 14504492 - 14504096
Alignment:
Q  9 tataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaa 108  Q
    ||||| || |||||||||||||||||||||| | | || ||||| || ||| | || || || || ||||||||||| ||||| ||||| ||||| ||||    
T  14504492 tataaatgcaatgttgatgcatcctttccaaataactcaaacaaagtgggttttggaatgtgtatccgagactcagatgggaatcatgtccgctctaaaa 14504393  T
Q  109 ttatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttga 208  Q
     |||| | || | |||| |||||||  | || || || || ||| | |||||||| || || || ||||||||||||||||||||  | |||||||||||    
T  14504392 ctatgtgcttttatccattttgctctattgatgttggggaggctctaggtttatatcatgcacttcggtggatacaagaacttcaactcacaaatgttga 14504293  T
Q  209 tttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgt 308  Q
    |||||||||||||| ||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||  | |||||| || |||    
T  14504292 tttcgaggttgactttaaaagaatagctgattatttcaacaaaggtcatggagatgtcaccgaatttggttttattatggatagtaatatccacttctgt 14504193  T
Q  309 cacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
     |||  ||||||| ||| |||||||| |||||||||||||||||||| ||||||||||| ||| ||||||| ||| ||||| |||||||||||||||    
T  14504192 aacacatacttaaaaaattctcatgtcgagtttattaggaggcaagcgaatgaggttgcacacgctctagctaagacagccacatctagtactagct 14504096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 69 - 405
Target Start/End: Original strand, 2439244 - 2439580
Alignment:
Q  69 tgcattcgagactcagaagggaaccatgtacgctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaag 168  Q
    |||||||||||||| || ||||||||||| ||||| ||||| ||| ||| | ||||    ||||| || || |||||||| ||  ||| |||| | || |    
T  2439244 tgcattcgagactcggatgggaaccatgtccgctctaaaatcatgtgttacactccttcctgctctgtcgatgtaggagaggccctggctttaaatcatg 2439343  T
Q  169 cgctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcac 268  Q
    || | ||||||||||| ||||||||  |  ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||| ||||    
T  2439344 cgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggagatgtcac 2439443  T
Q  269 cgaatttggttccattatggataagagtatcca-attgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||| ||||| |||||||||||||  ||| || |  || ||| |   ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2439444 cgagtttggctccattatggatagtagt-tcaagcttctgtaatggttatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 2439542  T
Q  368 tcacactctagccaaggcagccgcatctagtactagct 405  Q
    ||| ||| |||| ||||||||| ||| |||||||||||    
T  2439543 tcatactttagctaaggcagccacatgtagtactagct 2439580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 51 - 405
Target Start/End: Complemental strand, 8968717 - 8968363
Alignment:
Q  51 aaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaag 150  Q
    ||||| ||||| || || || ||||||||||| || ||||||||| | || || |||| |||| | ||  ||||||||||||| || || || || ||||    
T  8968717 aaggtgggtcttggcatgtgtattcgagactcggatgggaaccattttcgttctaaaactatgtggtttactccagtttgctctgtggatgttggggaag 8968618  T
Q  151 ctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaa 250  Q
    || | |  |||||||| ||| | |||||||| || ||||||||  |  |||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  8968617 ctcttgcattataccatgcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaa 8968518  T
Q  251 aggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggagg 350  Q
     |||| |||||||   ||||| || ||||| || |||||||| ||| ||||||| ||| | |   | ||||||||||||||||| |||||||||||||||    
T  8968517 cggccgtggagatggtaccgagttcggttctatcatggataatagtgtccaattctgtaaaaccaatttaacaaactctcatgtcgagtttattaggagg 8968418  T
Q  351 caagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
    ||||||||||||||||| ||  || |||| ||||||||| |||||||||||||||    
T  8968417 caagcaaatgaggttgcacatgctttagctaaggcagccacatctagtactagct 8968363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 199 - 405
Target Start/End: Complemental strand, 9734633 - 9734427
Alignment:
Q  199 caaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtat 298  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||| ||||||| ||||| || || |||||||| ||| |    
T  9734633 caaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaatggtcatggagatgtcaccgagtttggctctatcatggataatagtgt 9734534  T
Q  299 ccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagt 398  Q
    |||||| ||| | |   | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||  || |||| ||||||||| ||||||||    
T  9734533 ccaattctgtaataccaatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacatgctttagctaaggcagccacatctagt 9734434  T
Q  399 actagct 405  Q
    |||||||    
T  9734433 actagct 9734427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 174 - 405
Target Start/End: Original strand, 34934948 - 34935179
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||| ||||||||  |  ||||||||||||||||||||||||  |||||||| ||||||||||||||||| || | ||||||| ||||||| |    
T  34934948 cggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactaaaaaagagtagctgattatttcaacaatggtcgtggagatgtcaccgagt 34935047  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    |||| |||||||||||||  ||| |  | || ||| ||  ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |     
T  34935048 ttggctccattatggatagtagtttaaacttctgtaacgattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacataa 34935147  T
Q  374 tctagccaaggcagccgcatctagtactagct 405  Q
      |||| ||||||||| ||| |||||||||||    
T  34935148 gttagctaaggcagccacatgtagtactagct 34935179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 405
Target Start/End: Complemental strand, 2652015 - 2651784
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||||||||||||  | |||| ||||||||| || ||||||| ||||||||| ||||||||||||||||||||||  ||||||   |||||||    
T  2652015 cggtggatacaagaacttcaacttacaattgttgattttgaagttgactataaaagagtagctgattatttcaacaaaggccgcggagatgctaccgaat 2651916  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    |||| || |||||||| || | |||  | || | | ||| ||| ||||||||||||||||| |||||||||||||||||| | ||||||||||| || ||    
T  2651915 ttggctctattatggacaacaatatttacttttctaacacttatttaacaaactctcatgtcgagtttattaggaggcaaacgaatgaggttgcacatac 2651816  T
Q  374 tctagccaaggcagccgcatctagtactagct 405  Q
     ||||| | ||||||| |||||||||||||||    
T  2651815 actagctagggcagccacatctagtactagct 2651784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 405
Target Start/End: Original strand, 15789928 - 15790133
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || |||||||| ||| |||| || ||||||||||||||||| | ||||||| |||||||||||||||| || ||||| |  || ||     
T  15789928 aaatgttgattttgaagttgactcgaaacgagtagcagattatttcaacaaaggtcgtggagatgtcaccgaatttggttctataatggacagtagcatt 15790027  T
Q  300 caattgtgtca--catttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctag 397  Q
    || || ||||   || ||  ||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | |||||| ||||||||| |||||||    
T  15790028 catttctgtcgatcactt--ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcacataatctagctaaggcagccacatctag 15790125  T
Q  398 tactagct 405  Q
    | ||||||    
T  15790126 ttctagct 15790133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 403
Target Start/End: Original strand, 26307299 - 26307463
Alignment:
Q  239 ttatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgag 338  Q
    ||||||||| ||||| | ||||||| |||| |||||||| || ||||||||||  ||||| ||||| |||  || ||| |||| |||||||| ||| |||    
T  26307299 ttatttcaataaaggtcgtggagatgtcacggaatttggctctattatggatagtagtattcaattatgtagcacttatttaataaactctcctgtcgag 26307398  T
Q  339 tttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactag 403  Q
    |||||||||||||||| |||||||||||| ||  |  |||| | ||||||| |||||||||||||    
T  26307399 tttattaggaggcaagtaaatgaggttgcacatgcattagctagggcagccacatctagtactag 26307463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 32073722 - 32073618
Alignment:
Q  266 caccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggtt 365  Q
    |||||||||||| ||||||||||| || | |||||| || ||| | || |  ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32073722 caccgaatttgggtccattatggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggtt 32073623  T
Q  366 gctca 370  Q
    |||||    
T  32073622 gctca 32073618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 365
Target Start/End: Complemental strand, 13434603 - 13434480
Alignment:
Q  242 tttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtca--catttacttaacaaactctcatgttgagt 339  Q
    ||||| ||||||| |  ||||||||||||| ||||  |||||||||||||| |||||||  || ||| |  |||||  |||||||||||||||||| |||    
T  13434603 tttcatcaaaggcaaatgagatatcaccgagtttgactccattatggataatagtatcccgttttgtaattcattt--ttaacaaactctcatgttaagt 13434506  T
Q  340 ttattaggaggcaagcaaatgaggtt 365  Q
    |||||||||| |||| ||| ||||||    
T  13434505 ttattaggagacaagtaaaagaggtt 13434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 29704653 - 29704702
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| ||||||    
T  29704653 ttaaaaaactctcatgttgaatttattaggaggcaagcgaatgtggttgc 29704702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 48052386 - 48052426
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgagg 363  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  48052386 aaactcacatgttgagtttattaggaggcaagctaatgagg 48052426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 10981024 - 10980975
Alignment:
Q  321 acaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||| || ||||||||||||||||| ||| ||||| ||||||||||    
T  10981024 acaaactcgcaggttgagtttattaggagacaaacaaataaggttgctca 10980975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 37796615 - 37796664
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcaca 372  Q
    |||| ||||||| ||||||| |||||||||||| |||||||| |||||||    
T  37796615 aaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcaca 37796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 38998917 - 38998965
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcac 371  Q
    |||||||||||| ||||||| |||||||||||| |||| ||| ||||||    
T  38998917 aaactctcatgtcgagtttaataggaggcaagctaatggggtcgctcac 38998965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 5609882 - 5609486
Alignment:
Q  9 tataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaa 108  Q
    ||||| || |||||||||||||| ||||||| | | |  ||||| || ||| | || ||  |||| ||||| ||| | ||||| ||||| ||||| ||||    
T  5609882 tataaatgcaatgttgatgcatcatttccaaataacttaaacaaagtaggttttggaatgggcatccgagattcaaatgggaatcatgtccgctctaaaa 5609783  T
Q  109 ttatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttga 208  Q
     |||| |||||||||||| ||| ||  | ||  |||| || || ||||||||| | || ||    ||||||||||||||||||||  | |||||||||||    
T  5609782 ctatgtgtttctctccaggttgttctattgatataggggaggccttgggtttacatcacgcaactcggtggatacaagaacttcaactcacaaatgttga 5609683  T
Q  209 tttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgt 308  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||  ||||||||||  |||||||| || |||    
T  5609682 tttcgaggttggctctaaaagagtagctgattatttcaacaaaggtcgtggagatgtcaccgaatttggttttattatggatagcagtatccacttctgt 5609583  T
Q  309 cacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
     |||  |||||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||| |||| || |||||  |||||||||||||||    
T  5609582 aacacctacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcatacactttagctaaagcagctacatctagtactagct 5609486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 176 - 405
Target Start/End: Original strand, 33972945 - 33973175
Alignment:
Q  176 gtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaattt 275  Q
    ||||||||| ||||||||  |  ||||||||||||||||||||||||| ||| |||| ||||||||||||||||| || | ||||||| ||||||| |||    
T  33972945 gtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaacgagtagctgattatttcaacaatggtcgtggagatgtcaccgagttt 33973044  T
Q  276 ggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac-t 374  Q
    ||||||||||| ||||| ||| | ||||| ||| ||| ||| |||||||||||||||||  ||||||||| ||| ||| ||||||||||||| || || |    
T  33973045 ggttccattatagataatagtttacaattttgtaacacttatttaacaaactctcatgtcaagtttattaagagacaaacaaatgaggttgcacatacgt 33973144  T
Q  375 ctagccaaggcagccgcatctagtactagct 405  Q
     |||| |||| |||| |||||||||||||||    
T  33973145 ttagctaaggtagccacatctagtactagct 33973175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 69 - 405
Target Start/End: Original strand, 21824131 - 21824467
Alignment:
Q  69 tgcattcgagactcagaagggaaccatgtacgctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaag 168  Q
    ||||||||||| || || ||||||||||| ||||| ||||| ||| ||| | ||||    ||||| || ||  ||||||| ||  ||| | |||| || |    
T  21824131 tgcattcgagattcggatgggaaccatgtccgctctaaaatcatgtgttacactccttcctgctctgtcgatataggagaggccctggctctatatcatg 21824230  T
Q  169 cgctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcac 268  Q
    || | ||||||||||| ||||||||  |  |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||    
T  21824231 cgatccggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggtcgtggagatgtcac 21824330  T
Q  269 cgaatttggttccattatggataagagtatccaatt-gtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||| || || || ||||||||||  ||  || | ||  ||| |   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21824331 cgagttcggctctattatggatagtag-ctcaagttactgtaatgattacttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 21824429  T
Q  368 tcacactctagccaaggcagccgcatctagtactagct 405  Q
    ||| ||  |||| ||||||||| ||| |||| ||||||    
T  21824430 tcatacgttagctaaggcagccacatgtagttctagct 21824467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 174 - 405
Target Start/End: Original strand, 13783730 - 13783961
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    |||||||| || ||||||||  | | |||||||||||| || |||||||| ||| |||| || ||||||||||||||||||| ||||||| |||||||||    
T  13783730 cggtggatccatgaacttcaactcaaaaatgttgattttgaagttgactcgaaacgagtagcggattatttcaacaaaggccgtggagatgtcaccgaat 13783829  T
Q  274 ttggttccattatggataagagtatccaattgtgtc--acatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcac 371  Q
    |||||||||| ||||| |  || ||||| || ||||   |||||  |||||||| |||||||| ||||||| |||||||||||| ||||||||||| ||     
T  13783830 ttggttccataatggacagtagcatccatttttgtcggtcattt--ttaacaaaatctcatgtcgagtttactaggaggcaagcgaatgaggttgcacat 13783927  T
Q  372 actctagccaaggcagccgcatctagtactagct 405  Q
    |||||||| ||||||||| |||||||| ||||||    
T  13783928 actctagctaaggcagccacatctagttctagct 13783961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 199 - 405
Target Start/End: Complemental strand, 27244234 - 27244028
Alignment:
Q  199 caaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtat 298  Q
    ||||| ||||||||||||||||||| |||||||| | ||||||||||||||| || | |||| || ||||||| |||||||||||||||||||  ||| |    
T  27244234 caaatattgatttcgaggttgactcaaaaagagtagttgattatttcaacaatggtcgtggaaatgtcaccgagtttggttccattatggatagtagttt 27244135  T
Q  299 ccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagt 398  Q
     ||||| ||| | | ||| ||||||||||||||||| |||||||||||||  ||| ||||||||||||| || |   |||| ||||||||| ||||||||    
T  27244134 acaattttgtaatacttatttaacaaactctcatgtcgagtttattaggaaccaaacaaatgaggttgcacatatgttagctaaggcagccacatctagt 27244035  T
Q  399 actagct 405  Q
    |||||||    
T  27244034 actagct 27244028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 177 - 405
Target Start/End: Original strand, 5086457 - 5086685
Alignment:
Q  177 tggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttg 276  Q
    |||||| | ||||||||  | |||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||  ||| ||| ||||||||||||    
T  5086457 tggatatatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagctgattatttcaacaatggctgtggtgatgtcaccgaatttg 5086556  T
Q  277 gttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactct 376  Q
    |||| |||||| |||  |||||  | ||     | |   | ||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||    
T  5086557 gttctattatgaatagtagtatttactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcacatactct 5086656  T
Q  377 agccaaggcagccgcatctagtactagct 405  Q
    ||| | ||||||| |||||||||||||||    
T  5086657 agctagggcagccacatctagtactagct 5086685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 359
Target Start/End: Complemental strand, 32535192 - 32535005
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||| ||||||||  | ||||||||||| ||||||||| ||||  ||||||| |||||||||||||||||||| | ||||||| |||||||||    
T  32535192 cggtggatacatgaacttcaacttacaaatgttgacttcgaggttaactcataaagagtagctgattatttcaacaaaggtcgtggagatgtcaccgaat 32535093  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaac--tctcatgttgagtttattaggaggcaagcaaat 359  Q
    ||||||| || |||||||| || ||||| || |||  || ||| |||||||||  |||||||| |||||||||| ||| |||||||||    
T  32535092 ttggttctatcatggataatagcatccacttttgtagcacttatttaacaaactctctcatgtcgagtttattaagagacaagcaaat 32535005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 370
Target Start/End: Original strand, 29526699 - 29526883
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccatta 285  Q
    ||||||||| | |||||||||||||| ||||| || || |||| | | |||||||||||||||||||     ||||||| |||||||||||| |||||||    
T  29526699 gaacttcagctcacaaatgttgattttgaggtagattcgaaaacaatagctgattatttcaacaaagcaagaggagataacaccgaatttgggtccatta 29526798  T
Q  286 tggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||| || | |||||| || ||| | || |  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  29526799 tggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctca 29526883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 19017233 - 19017042
Alignment:
Q  176 gtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaattt 275  Q
    ||||||||| ||||||||    ||| |||||||||| ||||||||||| |||| ||| ||||||||||| || | ||   | |||||||||||||| |||    
T  19017233 gtggatacatgaacttcaacccacagatgttgattttgaggttgactcgaaaaaagtagctgattattttaatagagagaagggagatatcaccgagttt 19017134  T
Q  276 ggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    |||||||| |||||||| ||||| || || ||| |    || ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  19017133 ggttccatcatggataatagtatacatttctgtaattcatatttaacaaactctcgtgttgagtttattaggaggcaagcaaatgtggttgc 19017042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 174 - 367
Target Start/End: Complemental strand, 665197 - 665004
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||| ||||| ||||||||  |  |||| |||||||| |||||||| || |||||||| |||||||||||||||||||| |  ||| || ||||| |||    
T  665197 cggtgaatacatgaacttcaacttgcaaacgttgattttgaggttgattcaaaaagagtagctgattatttcaacaaaggtcgaggacatgtcaccaaat 665098  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||||||  ||||||||||   |||||||||| ||    |  || ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  665097 ttggttatattatggatagttgtatccaattttgcagtacctatttaacaaactctcatgtcgagtttattaggagacaagcaaatgaggttgc 665004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 370
Target Start/End: Complemental strand, 7097615 - 7097431
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccatta 285  Q
    ||||||||| | |||||||||||||| ||||| || || |||| ||| |||| |||||| |||||||||   ||||||| |||||||||||| |||||||    
T  7097615 gaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctggttattttaacaaaggcagaggagatagcaccgaatttggatccatta 7097516  T
Q  286 tggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||||| | |||| | || ||| | |  |  |||| ||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  7097515 tggataaaaatatcaagttttgtaatacctttttaataaactcttatgtcgagtttattaagaggcaagcaaatgaggttgctca 7097431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 405
Target Start/End: Complemental strand, 21588328 - 21588127
Alignment:
Q  204 gttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaat 303  Q
    |||||||| |||||||| || |||| | | ||||||||||||||||||||    |||||| | ||||||||||||||||||||||| |  ||||||||||    
T  21588328 gttgattttgaggttgattcgaaaataatagctgattatttcaacaaaggttgaggagatgttaccgaatttggttccattatggacagtagtatccaat 21588229  T
Q  304 tgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactag 403  Q
    | | |      || ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||     |||| || |||||| |||||||||||||    
T  21588228 tctatagttcctatttaacaaactctcatgtcgagtttattaggaggcaatcaaatgaggttgcacatgaattagctaacgcagccacatctagtactag 21588129  T
Q  404 ct 405  Q
    ||    
T  21588128 ct 21588127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 355
Target Start/End: Original strand, 15455676 - 15455845
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccat-ggagatatcaccgaatttggttccatt 284  Q
    ||||||||| | |||||||||||||| ||||| || || |||| ||| ||||||||||||||||| ||| |  ||||||| |||||||||||| ||||||    
T  15455676 gaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa-ggcaagaggagataacaccgaatttgggtccatt 15455774  T
Q  285 atggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagc 355  Q
    ||||| || | |||||| || ||| | || |  ||||||||||||||||| ||||||| ||||||||||||    
T  15455775 atggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagc 15455845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 39969998 - 39970055
Alignment:
Q  316 acttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    |||| ||||||||||  |||||||||| |||| | |||||||||||||||||||||||    
T  39969998 acttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttgctcacac 39970055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 6621403 - 6621369
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  6621403 gagtttattaggagacaagcaaatgaggttgctca 6621369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 9678263 - 9678221
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagcaaatg 360  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||    
T  9678263 ttaacaaattctcatgttgagtttattaggagacaaacaaatg 9678221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 15846957 - 15846923
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  15846957 gagtttattaggagacaagcaaatgaggttgctca 15846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 15856167 - 15856133
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  15856167 gagtttattaggagacaagcaaatgaggttgctca 15856133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 36308020 - 36308054
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  36308020 gagtttattaggagacaagcaaatgaggttgctca 36308054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 199 - 405
Target Start/End: Complemental strand, 14206 - 13998
Alignment:
Q  199 caaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtat 298  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||| ||||||| ||||| |||||||||||||| ||| |    
T  14206 caaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggagatgtcaccgagtttggatccattatggataatagttt 14107  T
Q  299 ccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac--tctagccaaggcagccgcatcta 396  Q
      | || ||| |   ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||  | |||| ||||||||| ||| ||    
T  14106 aaatttctgtaatgattacttaacaaactctcatgtcgagtttattaggaggcaagaaaatgaggttgctcataccttttagctaaggcagccacatgta 14007  T
Q  397 gtactagct 405  Q
    |||||||||    
T  14006 gtactagct 13998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 174 - 402
Target Start/End: Complemental strand, 14661 - 14434
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| | ||||||| || ||||||    
T  14661 cggtggatacatgaacttcaatttacaaatgttgatttcgaggttgactcaaaaatagttgctaattatttcaacaaaggtcgtggagatgtc-ccgaat 14563  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    ||||||  || || ||||| || ||||| || ||| ||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||    
T  14562 ttggttttatcattgataatagcatccatttctgtaacaattatttaacaaactctcatgtcgaatttattaggaggcaagcaaatgaggttgcacatac 14463  T
Q  374 tctagccaaggcagccgcatctagtacta 402  Q
    | |||| ||| ||  | ||||||||||||    
T  14462 tttagctaagacaatcacatctagtacta 14434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 174 - 405
Target Start/End: Complemental strand, 28162164 - 28161933
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||| ||||||||  |  ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||| ||||||| |    
T  28162164 cggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggagatgtcaccgagt 28162065  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    |||| |||||||||||||  ||| |    || ||| |  |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||    
T  28162064 ttggctccattatggatagtagtttaagcttctgtaatgtttatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgcacatac 28161965  T
Q  374 tctagccaaggcagccgcatctagtactagct 405  Q
      |||| ||| ||||| ||| |||||||||||    
T  28161964 gttagctaagacagccacatgtagtactagct 28161933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 174 - 405
Target Start/End: Complemental strand, 25732547 - 25732316
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    |||||||| || ||||||||  |  ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||| |    
T  25732547 cggtggattcatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggagatatcaccgagt 25732448  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    |||| |||||||||||||  ||| |    || ||| |    || ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||  |    
T  25732447 ttggctccattatggatagtagtttaagcttctgtaatgaatatttaacaaactctcatgtcgagtttattaggaggtaagcaaatgaggttgcacatgc 25732348  T
Q  374 tctagccaaggcagccgcatctagtactagct 405  Q
    | |||| |||||| || ||| |||||||||||    
T  25732347 tttagctaaggcaaccacatgtagtactagct 25732316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 367
Target Start/End: Original strand, 3989354 - 3989574
Alignment:
Q  147 gaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttca 246  Q
    ||||| |||||| ||||||| ||  | |||||||||||  |||||||  | | |||||||||||| ||| |||| || |||| ||| ||||||||||| |    
T  3989354 gaagccttgggtctataccatgcaattcggtggatacataaacttcaactcataaatgttgattttgagattgattcgaaaatagtagctgattatttta 3989453  T
Q  247 acaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattag 346  Q
    | ||| | | ||||||||||||| | ||| |||||||||||||||  ||||||||||| ||| |    || ||||||||||||||||| |||||||||||    
T  3989454 ataaaagtcgtggagatatcaccaagtttcgttccattatggatagtagtatccaattatgtaattcctatttaacaaactctcatgtggagtttattag 3989553  T
Q  347 gaggcaagcaaatgaggttgc 367  Q
      | |||||||||||||||||    
T  3989554 acgacaagcaaatgaggttgc 3989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 7995044 - 7995237
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||| | ||||||||  |  |||| ||||||||  ||||||| || |||||||| |||||||||||||||||||  |  |||||| ||| |||||    
T  7995044 cggtggataaatgaacttcaacttgcaaacgttgatttttaggttgattcgaaaagagtagctgattatttcaacaaagatcgaggagatgtcatcgaat 7995143  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||||||||||||||||||  ||||||||||| | |      || ||||||||||||||||| |||||||||| || |||| ||||||| |||||    
T  7995144 ttggttccattatggatagtagtatccaattttatagttcctatttaacaaactctcatgtcgagtttattatgaagcaaacaaatgaagttgc 7995237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 365
Target Start/End: Complemental strand, 12784275 - 12784113
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||| ||| |||||||| || |||||||| ||||||||||| |||||||| |  |||||| |||||||||| ||||||||||||||||  ||||||    
T  12784275 aaatgttgcttttgaggttgattcgaaaagagtagctgattattt-aacaaaggtcgaggagatgtcaccgaattgggttccattatggatagtagtatc 12784177  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggtt 365  Q
    ||||| | |      || |||  |||||||||||| ||||||||||| |||||| |||||||||||    
T  12784176 caattctatagttcctattta--aaactctcatgtggagtttattagaaggcaaacaaatgaggtt 12784113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 200 - 364
Target Start/End: Original strand, 25133057 - 25133221
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||| ||| || ||||| || |||| ||| ||| ||||||| ||||||||    |||||| |||  || |||||||||||||||||||  ||||||    
T  25133057 aaatgttggttttgaagttgattcgaaaatagtagctcattattttaacaaaggtaggggagatgtcagagagtttggttccattatggatagtagtatc 25133156  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggt 364  Q
    ||||| ||| |    || |||| |||||||||| ||||||||||||||||||||| |||||||||    
T  25133157 caattatgtaattcctatttaataaactctcatattgagtttattaggaggcaagaaaatgaggt 25133221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 39533709 - 39533753
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgc 367  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  39533709 aaactctcatgttgagtttattaggaggcaagcgaatgtggttgc 39533753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 14848462 - 14848428
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  14848462 gagtttattaggagacaagcaaatgaggttgctca 14848428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 12247058 - 12247106
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttg 366  Q
    |||||||||||||||||||| ||||||| || |||| ||||||| ||||    
T  12247058 ttaacaaactctcatgttgactttattaagaagcaaacaaatgaagttg 12247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 199 - 403
Target Start/End: Original strand, 797 - 1001
Alignment:
Q  199 caaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtat 298  Q
    |||||||| ||||||||||||| || |||||||| ||| |||||||||||||||| | ||||||| ||||||| |||||||||||||||||||| ||  |    
T  797 caaatgttaatttcgaggttgattcaaaaagagtagctaattatttcaacaaaggtcgtggagatgtcaccgagtttggttccattatggataatagctt 896  T
Q  299 ccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagt 398  Q
    | | || ||| |   ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||| ||||||||| ||| ||||    
T  897 caatttctgtaatgattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcataccttagctaaggcagccacatgtagt 996  T
Q  399 actag 403  Q
    |||||    
T  997 actag 1001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 174 - 405
Target Start/End: Complemental strand, 11740 - 11509
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||| ||||||||  |  ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||   ||||||| ||||||| |    
T  11740 cggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtagtggagatgtcaccgagt 11641  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    |||| |||||||||| ||  ||| |    || ||| |    || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  11640 ttggctccattatgggtagtagtttaagcttctgtaatgaatatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatac 11541  T
Q  374 tctagccaaggcagccgcatctagtactagct 405  Q
    | |||| ||||||||| ||| |||||||||||    
T  11540 tttagctaaggcagccacatgtagtactagct 11509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 200 - 402
Target Start/End: Original strand, 11986100 - 11986302
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||||||| ||||||| |||||||| ||| ||||||||||||| || | |||| || ||||||| |||||||||||||||||||  ||| ||    
T  11986100 aaatgttgatttcgagattgactcaaaaagagtagctaattatttcaacaatggtcgtggaaatgtcaccgagtttggttccattatggatagtagtgtc 11986199  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagta 399  Q
    ||| | ||| ||| ||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||  ||||||| ||||||||| | |||||||    
T  11986200 caactttgtaacacttatttaacaaactctcatgtcgagtttattaggaggcaagtaaacgaggttgcacatgctctagctaaggcagccacgtctagta 11986299  T
Q  400 cta 402  Q
    |||    
T  11986300 cta 11986302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 174 - 405
Target Start/End: Original strand, 10516013 - 10516244
Alignment:
Q  174 cggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaat 273  Q
    ||||||||||| ||||||||  | | |||||||||||||||||||| ||| ||||| || |||||||||||||||||||| | ||||||| ||||| | |    
T  10516013 cggtggatacatgaacttcaactcataaatgttgatttcgaggttgtctcaaaaagtgtagctgattatttcaacaaaggtcgtggagatgtcaccaagt 10516112  T
Q  274 ttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacac 373  Q
    ||||||  ||||||||||  || |||||||| |||  || ||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||  || ||    
T  10516113 ttggttgtattatggatagtagcatccaattatgtagcacttatttaacaaactctcatgtcgagtttattaggaggtaaggaaatgaggttgtgcatac 10516212  T
Q  374 tctagccaaggcagccgcatctagtactagct 405  Q
    | || | |||||| || |||||| ||||||||    
T  10516213 tttaactaaggcaaccacatctaatactagct 10516244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 200 - 405
Target Start/End: Original strand, 21698595 - 21698800
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || |||||||  |||||||| ||||||||||||||||| || | ||||||| ||||||||||||| || |||||||| |  ||| ||    
T  21698595 aaatgttgattttgaagttgactaaaaaagagtagctgattatttcaacaatggtcgtggagatgtcaccgaatttggctctattatggacagtagtgtc 21698694  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagta 399  Q
    || ||  |  | | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | |||| ||||||||| |||||||||    
T  21698695 catttccgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctcatgttttagctaaggcagccacatctagta 21698794  T
Q  400 ctagct 405  Q
    ||||||    
T  21698795 ctagct 21698800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 175 - 361
Target Start/End: Complemental strand, 7090627 - 7090441
Alignment:
Q  175 ggtggatacaagaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatt 274  Q
    ||||||| || ||||||| | | |||||||||||||| |||||||| |  |||| ||| ||||||| ||| ||||||||||  |||||||||||||| ||    
T  7090627 ggtggattcatgaacttcggctcacaaatgttgattttgaggttgattaaaaaatagtagctgattcttttaacaaaggcctgggagatatcaccgagtt 7090528  T
Q  275 tggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatga 361  Q
    |||||||||||||||||  |||||||||||  || |    || ||||||||||||||||||||||||||||||||||||||||||||    
T  7090527 tggttccattatggatactagtatccaattcagtaaatcatatttaacaaactctcatgttgagtttattaggaggcaagcaaatga 7090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 186 - 370
Target Start/End: Original strand, 15950671 - 15950855
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccat-ggagatatcaccgaatttggttccatt 284  Q
    ||||||||| | |||||||||||||| ||||| || || |||| ||| ||||||||||||||||| ||| |  ||||||| |||||||||||| ||||||    
T  15950671 gaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaa-ggcaagaggagataacaccgaatttgggtccatt 15950769  T
Q  285 atggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||| || | |||||| || ||| | || |  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  15950770 atggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctca 15950855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 260 - 405
Target Start/End: Complemental strand, 1638390 - 1638245
Alignment:
Q  260 agatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaat 359  Q
    |||| ||||||||||||| || ||||||||||  ||||| || || ||| ||| ||| ||||||||||||||||| || |||||||||||||||||||||    
T  1638390 agatgtcaccgaatttggctctattatggatagtagtatacacttatgtaacaattatttaacaaactctcatgtcgaatttattaggaggcaagcaaat 1638291  T
Q  360 gaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
    |||||||| || ||| |||| ||| ||||| |||||||||||||||    
T  1638290 gaggttgcacatactttagctaagacagccacatctagtactagct 1638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 405
Target Start/End: Complemental strand, 1641417 - 1641273
Alignment:
Q  260 agatatcaccgaatttggttccattatggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaat 359  Q
    |||| ||||||||||||| || ||||||||||  ||||| || || ||| ||| ||| ||||||||| ||||||| || |||||||||||||||||||||    
T  1641417 agatgtcaccgaatttggctctattatggatagtagtatacacttatgtaacaatta-ttaacaaacgctcatgtcgaatttattaggaggcaagcaaat 1641319  T
Q  360 gaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
    |||||||| || ||| |||| ||| ||||| |||||||||||||||    
T  1641318 gaggttgcacatactttagctaagacagccacatctagtactagct 1641273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 370
Target Start/End: Complemental strand, 30063847 - 30063677
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| ||  | ||||  |||| ||| ||||||||||||||||| || |  |||||| ||||| ||||||| || || ||||| |  ||| ||    
T  30063847 aaatgttgattttgaaatggactaaaaaatagtagctgattatttcaacaatggtcgcggagatgtcaccaaatttggatctatcatggacagtagtgtc 30063748  T
Q  300 caattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||| ||  | | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30063747 caattctgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgctca 30063677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 370
Target Start/End: Original strand, 13434224 - 13434408
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccatta 285  Q
    ||||||||| | |||||||||||||| ||| | || || |||| ||| | ||||||||| |||||||||   ||||||| || | ||||||  || ||||    
T  13434224 gaacttcagctcacaaatgttgattttgagatagattcgaaaacagtagttgattattttaacaaaggcagaggagatagcatcaaatttgaatcaatta 13434323  T
Q  286 tggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||||| |||||||| || | | |  | |  |||||||||||||||||||||||||||||||| ||| |||| ||| |||||||    
T  13434324 tggataatagtatccagttttctaatttctttttaacaaactctcatgttgagtttattaggagacaatcaaaagagattgctca 13434408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 198 - 345
Target Start/End: Original strand, 23631469 - 23631616
Alignment:
Q  198 acaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagta 297  Q
    |||||||| ||||| ||||| || || |||| ||| | ||||||||| |||||||||   | ||||| |||||||||||| |||||||||||||| | ||    
T  23631469 acaaatgtcgattttgaggtagattcgaaaacagtagttgattattttaacaaaggcagcgaagatagcaccgaatttggatccattatggataataata 23631568  T
Q  298 tccaattgtgtcacatttacttaacaaactctcatgttgagtttatta 345  Q
    |||| || ||| | || |  ||||||||||||||| | ||||||||||    
T  23631569 tccatttttgtaatatatttttaacaaactctcatatcgagtttatta 23631616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 15923860 - 15923709
Alignment:
Q  71 cattcgagactcagaagggaaccatgtacgctccaaaattatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcg 170  Q
    ||||||||| |||| |||||||||||| ||||| ||||| ||| | ||  | ||| | ||||| || ||||| |||||||| |||||  ||||||| ||     
T  15923860 cattcgagattcagcagggaaccatgtccgctcaaaaatcatgtggtttacaccattgtgctcagttgacgttggagaagcattggggatataccatgca 15923761  T
Q  171 ctacggtggatacaagaacttcagttaacaaatgttgatttcgaggttgact 222  Q
     |  |||||||||| ||||||||  | ||||||||||||||  |||||||||    
T  15923760 atttggtggatacatgaacttcaactcacaaatgttgattttaaggttgact 15923709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 30148023 - 30148060
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagc 355  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30148023 ttaacaaactctcatgtcgagtttattaggaggcaagc 30148060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 17812263 - 17812297
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  17812263 gagtttattaggagacaagcaaatgaggttgctca 17812297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 33132324 - 33132290
Alignment:
Q  336 gagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  33132324 gagtttattaggagacaagcaaatgaggttgctca 33132290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 6047326 - 6047377
Alignment:
Q  318 ttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||||||||||||||  ||||||| ||||||||| |||| |||||||||    
T  6047326 ttaacaaactctcatgttgcatttattaagaggcaagcgaatg-ggttgctca 6047377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 19047097 - 19047145
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcac 371  Q
    |||||||||||| ||||||| |||||||||||| |||| ||| ||||||    
T  19047097 aaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcac 19047145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 304
Target Start/End: Original strand, 33169432 - 33169532
Alignment:
Q  204 gttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaat 303  Q
    ||||||||||||||||  |   ||||||| ||||||||||||||||||||    |||||| ||||  |||||| |||||| |||||||   |||||||||    
T  33169432 gttgatttcgaggttgctttggaaagagtagctgattatttcaacaaaggttgaggagatgtcactaaatttgtttccatcatggatagttgtatccaat 33169531  T
Q  304 t 304  Q
    |    
T  33169532 t 33169532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 235086 - 234690
Alignment:
Q  9 tataagtgtaatgttgatgcatcctttccaagtgattccaacaaggtcggtctggggatctgcattcgagactcagaagggaaccatgtacgctccaaaa 108  Q
    ||||| || ||||||||||||||||||||||   | |||||||| || ||| | ||||| ||||| ||||| || || ||||| ||||| || || ||||    
T  235086 tataaatgcaatgttgatgcatcctttccaaacaactccaacaaagtaggttttgggatgtgcatccgagattctgatgggaatcatgtccggtctaaaa 234987  T
Q  109 ttatgagtttctctccagtttgctcggtagacgtaggagaagctttgggtttataccaagcgctacggtggatacaagaacttcagttaacaaatgttga 208  Q
      |||  |||||||||||  |||||  | || ||||| || ||  ||||| || || | ||  | ||||||||||||||||||||    |||||||||||    
T  234986 ccatgtttttctctccaggctgctctattgatgtaggggaggccctgggtctacactacgcaattcggtggatacaagaacttcaacctacaaatgttga 234887  T
Q  209 tttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatccaattgtgt 308  Q
    ||| || ||||||||||||||||| ||||||||||| ||||||||    ||||||   ||||||||||| || |||||||| |  |||||  | || | |    
T  234886 ttttgaagttgactctaaaagagtagctgattatttgaacaaaggttgcggagatgctaccgaatttggctctattatggacagtagtatttacttttct 234787  T
Q  309 cacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctagtactagct 405  Q
     | | ||||||||||||||||||||| |||||||||||||||||| | ||||||||||| || || ||||| | |||| || |||||||||||||||    
T  234786 aatacttacttaacaaactctcatgtcgagtttattaggaggcaaacgaatgaggttgcacatacactagctagggcatccacatctagtactagct 234690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 405
Target Start/End: Complemental strand, 2418 - 2213
Alignment:
Q  200 aaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccattatggataagagtatc 299  Q
    |||||||||||| || |||||||| ||| |||| || ||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| |  || |||    
T  2418 aaatgttgattttgaagttgactcgaaacgagtagcggattatttcaacaaaggcagtggagatgtcaccgaatttggttccataatggacagtagcatc 2319  T
Q  300 caattgtgtc--acatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacactctagccaaggcagccgcatctag 397  Q
    || || ||||   |||||  ||||||||||||||||| ||||||| |||||||||||| ||||||||| | || |||||||| ||||||||| |||| ||    
T  2318 catttctgtcggtcattt--ttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggtttcacatactctagctaaggcagccacatccag 2221  T
Q  398 tactagct 405  Q
    | ||||||    
T  2220 ttctagct 2213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 366
Target Start/End: Original strand, 52547 - 52727
Alignment:
Q  186 gaacttcagttaacaaatgttgatttcgaggttgactctaaaagagttgctgattatttcaacaaaggccatggagatatcaccgaatttggttccatta 285  Q
    ||||||||| | |||||||||||||| ||||| || || |||| ||| |||||||||||  |||||| |   ||||||| |||||||||||| |||||||    
T  52547 gaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattattttcacaaagccagaggagataacaccgaatttggatccatta 52646  T
Q  286 tggataagagtatccaattgtgtcacatttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttg 366  Q
    |||| || | |||||| || ||  | || |  ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  52647 tggagaatactatccagttttgcaatatatttttaacaaactctcatgtcgagtttattaggaggcaagcaaatgacgttg 52727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 5426 - 5379
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  5426 aaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctca 5379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 11031 - 11078
Alignment:
Q  323 aaactctcatgttgagtttattaggaggcaagcaaatgaggttgctca 370  Q
    |||||||| |||||||||| |  |||||||||||||||||||||||||    
T  11031 aaactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctca 11078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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