View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5382-Insertion-2 (Length: 540)
Name: NF5382-Insertion-2
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Original strand, 35478518 - 35479032
Alignment:
| Q |
8 |
actagggagtttgataagagacttggtttgtgttttgttttggtaggaagagcatgaccaaatcagagcaaagaaaagttgccaagacgtaccattggag |
107 |
Q |
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| T |
35478518 |
actagggagtttgataagagacttggtttgtgttttgttttggtaggaagagcatgaccaaatcagagcaaagaaaagttgccaagacgtaccattggag |
35478617 |
T |
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| Q |
108 |
tggacagattacaagtcaatggcatttactcaatgtgtaagatcattaatattctgctgattcaaaacatcaaaagtaaaa-cccgtttcacatacnnnn |
206 |
Q |
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| T |
35478618 |
tggacagattacaagtcaatggcatttactcaatgtgtaagatcattaa-attctgctgattcaaaacatcaaaagaaaaaacccgtttcacatacaaaa |
35478716 |
T |
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| Q |
207 |
nnngcacaacatattatcttcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcagacataattggtggg |
306 |
Q |
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| T |
35478717 |
aaagcacagcatattatcttcttatattaataatcttgtccttgtttgttctatgtaggttgtgaatgagactttaaggatggcaaacataattggtggg |
35478816 |
T |
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| Q |
307 |
atatttaggagagcaatgacagacatcaatatcaaaggtatagtatgtattatcatgacaaaaacataatttaaaatcaaaacatttattttgaatttta |
406 |
Q |
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| T |
35478817 |
atatttaggagagcaatgacagacatcaatatcaaaggtatagtatacattatcatgacaaaaacataatttaaaatcaaaacatttattttgaatttta |
35478916 |
T |
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| Q |
407 |
atttttgacttgtaatacaggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcg |
506 |
Q |
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| T |
35478917 |
atttttgacttgtaatacaggctacactattccaaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcg |
35479016 |
T |
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| Q |
507 |
cgcaccttcaatccat |
522 |
Q |
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| T |
35479017 |
cgcaccttcaatccat |
35479032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 31556845 - 31556890
Alignment:
| Q |
103 |
tggagtggacagattacaagtcaatggcatttactcaatgtgtaag |
148 |
Q |
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| T |
31556845 |
tggaatggacagattacaagtcaatgacatttactcaatgtgtaag |
31556890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 31556956 - 31557045
Alignment:
| Q |
257 |
ctatgtaggttgtgaatgagactttaaggatggcagacataattggtgggatatttaggagagcaatgacagacatcaatatcaaaggta |
346 |
Q |
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| T |
31556956 |
ctatgcaggttgtgaatgagaccttaagggttgcaaacataattggtgccatatttaggagaacaaccacagacatcgacataaaaggta |
31557045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 31557178 - 31557243
Alignment:
| Q |
457 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccat |
522 |
Q |
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| T |
31557178 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccat |
31557243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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