View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5382-Insertion-3 (Length: 534)
Name: NF5382-Insertion-3
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 255 - 523
Target Start/End: Original strand, 46757227 - 46757492
Alignment:
| Q |
255 |
tggaaggaattgtcaataagaaattcaaattatttgtattagnnnnnnnnnnnnngaaccaattattatttgtagtagttagatgtaaacaacagatggg |
354 |
Q |
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| T |
46757227 |
tggaaggatttgtcaataagaaattcaaattatttgtattagtttttttgtttttgaaccaatta---tttgtagtagttagatgtaaacaacagatggg |
46757323 |
T |
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| Q |
355 |
aaagaagaaaataagtagcgtaaaacatggtgaataataaggaaaaggacatttttgacaatatgaggtatttaaaatgatatattgaagagtggaaaat |
454 |
Q |
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| T |
46757324 |
aaagaagaaaataagtagcgtaaaacatggtgaataataaggaaaaggacatttttgacaatatgaggtatttaaaatgatatattgaagagtggaaaat |
46757423 |
T |
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| Q |
455 |
agctgcctccctggtaggttctttgtatttatttattatatagtcctgttttgcagggccatccagagg |
523 |
Q |
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| T |
46757424 |
agctgcctccctggtaggttctttgtatttatttattatatagtcctgttttgcagggccatgcagagg |
46757492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 46756979 - 46757187
Alignment:
| Q |
7 |
atcagaatcataggaaattccattaaggtcattgagagattgtcaacataattcgtgaatcgctgtgtgatgttagtaatactgtgattgattgctaaga |
106 |
Q |
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| T |
46756979 |
atcagaatcacaggaaattccattaaagtcattgagagattgtcaacataattcgtgaatcgatgtgtgatgttaataatactgtgattgattgctaaga |
46757078 |
T |
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| Q |
107 |
aggtaagttagtatctaggacatcaatgaagcgtctaagcgtgtaactttctaggcaaaattcattatgtattgggtttccatctggtccgaaacaatat |
206 |
Q |
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| T |
46757079 |
aggtaagttagtatctaggacgtcaatgaagcgtctaagtgtgtaactttctaggcaaaattcattatgtattgggtttccatctggtccgaaacaatat |
46757178 |
T |
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| Q |
207 |
ttgatatat |
215 |
Q |
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| T |
46757179 |
ttgatatat |
46757187 |
T |
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