View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5382-Insertion-4 (Length: 230)
Name: NF5382-Insertion-4
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382-Insertion-4 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 39813403 - 39813180
Alignment:
| Q |
7 |
aatcgtattatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813403 |
aatcgtattatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaat |
39813304 |
T |
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| Q |
107 |
aatgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813303 |
aatgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaat |
39813204 |
T |
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| Q |
207 |
tcatcctcatttacaaatcccacc |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
39813203 |
tcatcctcatttacaaatcccacc |
39813180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 39804874 - 39804652
Alignment:
| Q |
8 |
atcgtattatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39804874 |
atcgtattatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaata |
39804775 |
T |
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| Q |
108 |
atgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaatt |
207 |
Q |
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| T |
39804774 |
atgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaatt |
39804675 |
T |
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| Q |
208 |
catcctcatttacaaatcccacc |
230 |
Q |
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| T |
39804674 |
catcctcatttacgaatcccacc |
39804652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 39824912 - 39824689
Alignment:
| Q |
7 |
aatcgtattatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaat |
106 |
Q |
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|||| |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39824912 |
aatcatattatatatgaaagtatggattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcgatgctacaaat |
39824813 |
T |
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| Q |
107 |
aatgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39824812 |
aatgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagctggaatttgatacacatctcccttcttcaaatccctctctgccaat |
39824713 |
T |
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| Q |
207 |
tcatcctcatttacaaatcccacc |
230 |
Q |
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||||||| || || ||||||||| |
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| T |
39824712 |
tcatccttatatatgaatcccacc |
39824689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 39909850 - 39909651
Alignment:
| Q |
13 |
attatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaataatgtg |
112 |
Q |
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|||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| |
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| T |
39909850 |
attatatataaaggtattgatt----atacaaatgcttgtatatacctggaaaataccaattcccaaactctctgaggggtcaatgctgcaaataatgtg |
39909755 |
T |
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| Q |
113 |
aagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaattcatcc |
212 |
Q |
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| T |
39909754 |
aagtttttgaccctccccaatatttgacaaataaaatgcagaaccagctggaatttgatacacatcccccttcttcaattcactctcctccaattcattc |
39909655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 39882479 - 39882282
Alignment:
| Q |
15 |
tatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaataatgtgaa |
114 |
Q |
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||||||||||||| |||| |||| ||||||| | |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
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| T |
39882479 |
tatatataaaggt----attggttatgcaaatgcttgtatatacctggaaaataccaattctcaaactctctgaggggtcaatgctgcaaataatgtgaa |
39882384 |
T |
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| Q |
115 |
gcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaattcatcctc |
214 |
Q |
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| T |
39882383 |
gtttttgaccctcaccaatattcgacaaatagaatgcagaaccagctggaatttgatatacatcccccttcttcaattcgctctcctccaattcatcctc |
39882284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 39921169 - 39920970
Alignment:
| Q |
13 |
attatatataaaggtattgattgattatacaaatgcatatatatacctggaaaataccaattctcaaactctcggatgggtcaatgctacaaataatgtg |
112 |
Q |
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||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| |
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| T |
39921169 |
attatatataaaggtattgctt----atacaaatgcttgtatatacctggaaaataccaattcccaaactctctgaggggtcaatgctgcaaataatgtg |
39921074 |
T |
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| Q |
113 |
aagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaatttgatacacatctcccttcttcaaatccctctctgccaattcatcc |
212 |
Q |
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||| |||||| |||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||||||| | |
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| T |
39921073 |
aagtttttgaccctccccaatattcgacaaataaaatgcagaaccagctggaatttgatatacatcccccttcttcaattcgctctcctccaattcattc |
39920974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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