View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5382-Insertion-5 (Length: 313)
Name: NF5382-Insertion-5
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 32488086 - 32487787
Alignment:
| Q |
12 |
tgtcttgtgagttagatcttactatttgagaaatgttagggttcatgtatcatataatgtgcaatatatatctaggtcagttcatgccaactactataaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32488086 |
tgtcttgtgagttagatcttactatttgagaaatgttatggttcatgtatcatataatgtgcaatatatatctaagtcagttcatgccaactactataaa |
32487987 |
T |
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| Q |
112 |
ttgtcactatcaagnnnnnnnnngttggtgttaatgtgcctcagtcaatagatccaacattggttactgcattttcctaaacagttctttaatttcttgt |
211 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32487986 |
ttgtcactatcaagtttttttttg--ggtgttaatgtgcctcagtcaatagatccaacattggttactgcattttcctaaacagttctttaatttcttgt |
32487889 |
T |
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| Q |
212 |
tcatattttgatgtcttagtacactacagagtattatttcttgttcatattgtgacataatcatcatgttatgaaaaattgcagcctaattaagatcttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32487888 |
tcatattttgatgtcttagtacactacagagtattatttcttgttcatattgtgacataatcatcatgttatgaaaaattgcagcctaattaagatcttc |
32487789 |
T |
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