View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5382_high_3 (Length: 403)

Name: NF5382_high_3
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5382_high_3
NF5382_high_3
[»] chr3 (3 HSPs)
chr3 (18-386)||(40136137-40136492)
chr3 (134-228)||(2410026-2410120)
chr3 (13-95)||(37334995-37335077)
[»] chr4 (1 HSPs)
chr4 (109-177)||(2635109-2635177)
[»] chr7 (1 HSPs)
chr7 (133-175)||(44638542-44638584)
[»] chr5 (3 HSPs)
chr5 (136-177)||(370808-370849)
chr5 (136-177)||(25548464-25548505)
chr5 (23-103)||(3928188-3928267)
[»] chr1 (1 HSPs)
chr1 (195-228)||(15515210-15515243)
[»] chr6 (1 HSPs)
chr6 (42-102)||(8092133-8092193)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 40136137 - 40136492
Alignment:
Q  18 tgaatgtaaaatgttttttgttttaatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaattataaaattctaatttcaagtat 117  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  40136137 tgaatgtaaaatattttttgttttaatacatttttgtaaaaatgagttcaacaatgaatttgattgttaaaatcaattataaaattctaatttcaagtat 40136236  T
Q  118 aatgaactcttgagacaaaatcagttttacttaaaaacaatcaaacatatcataatcaatgtatacacctataaaaacaattttgaccccaccaaaaatg 217  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||    
T  40136237 aatgaactcttgagacaaaatcagttttacttaaaaataattaaacatatcataatcaatgtatacacctataaaagcaattttgaccccactaaaagtg 40136336  T
Q  218 aaatcaaacatctacgatcaaacatacacgtattctttaggtgatggagtggctatggatggatacatactggctatggcccacgcctgtcaagcaatta 317  Q
    ||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40136337 aaatcaaaca-------------atacacgtattctttaggtgatggagtggctatggatggatacatactggctatggcccacgcctgtcaagcaaata 40136423  T
Q  318 aggggtttatcaaggcttaaaaaagaggcatacttttgtatcaagttatcaatttctttgtttaggcat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40136424 aggggtttatcaaggcttaaaaaagaggcatacttttgtatcaagttatcaatttctttgtttaggcat 40136492  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 2410026 - 2410120
Alignment:
Q  134 aaaatcagttttacttaaaaacaatcaaacatatcataatcaatgtatacacctataaaaacaattttgaccccaccaaaaatgaaatcaaacat 228  Q
    ||||||| || ||||| | ||||  ||||||| ||| ||| ||| | ||||||| || ||||||||||||| ||||||||| |||||||||||||    
T  2410026 aaaatcaattctacttgagaacatccaaacatgtcaaaataaatttttacacctttagaaacaattttgactccaccaaaagtgaaatcaaacat 2410120  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 37334995 - 37335077
Alignment:
Q  13 tgagatgaatgtaaaatgttttttgttttaatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaatt 95  Q
    |||| |||| ||||| || ||| ||| | ||||||||  |||||||||||||||||||||||||| || | | ||||||||||    
T  37334995 tgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaatt 37335077  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 2635177 - 2635109
Alignment:
Q  109 ttcaagtataatgaactcttgagacaaaatcagttttacttaaaaacaatcaaacatatcataatcaat 177  Q
    |||||| ||||| || ||| ||| ||||||||||| ||||||||| ||||||||||| ||| |||||||    
T  2635177 ttcaagcataatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaat 2635109  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 44638542 - 44638584
Alignment:
Q  133 caaaatcagttttacttaaaaacaatcaaacatatcataatca 175  Q
    |||||||| ||||||| |||||||||||||||| |||||||||    
T  44638542 caaaatcaattttactaaaaaacaatcaaacatttcataatca 44638584  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 370808 - 370849
Alignment:
Q  136 aatcagttttacttaaaaacaatcaaacatatcataatcaat 177  Q
    ||||| || ||||||||||||| |||||||||||||||||||    
T  370808 aatcaattctacttaaaaacaaccaaacatatcataatcaat 370849  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 25548505 - 25548464
Alignment:
Q  136 aatcagttttacttaaaaacaatcaaacatatcataatcaat 177  Q
    ||||| |||||||||||| ||||||||||| |||||||||||    
T  25548505 aatcaattttacttaaaagcaatcaaacatgtcataatcaat 25548464  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 3928267 - 3928188
Alignment:
Q  23 gtaaaatgttttttgttttaatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaattataaaatt 103  Q
    |||||||| ||| ||||| |||| |||  ||||||| ||||||||  ||| ||||||||| |||||||||||| |||||||    
T  3928267 gtaaaatgatttatgtttgaatatattggtataaaa-tgagttgagtaataaatttaattgttaaaatcaattctaaaatt 3928188  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 15515210 - 15515243
Alignment:
Q  195 caattttgaccccaccaaaaatgaaatcaaacat 228  Q
    |||||||||||||||||||| |||||||||||||    
T  15515210 caattttgaccccaccaaaattgaaatcaaacat 15515243  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 8092133 - 8092193
Alignment:
Q  42 aatacatttttataaaaatgagttgaacaatgaatttaattattaaaatcaattataaaat 102  Q
    |||| |||| ||||||||||| ||||||||| ||||||| ||| ||| |||||| ||||||    
T  8092133 aatatatttatataaaaatgaattgaacaataaatttaagtataaaattcaattctaaaat 8092193  T

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