View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5382_high_6 (Length: 254)
Name: NF5382_high_6
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382_high_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 26041789 - 26041932
Alignment:
| Q |
111 |
catgtttgctcggaatttaagttgaatgtttcaaataaaaaacggttacacattactccttttataaatatagaaacgtatctcttagttttatttgttc |
210 |
Q |
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| T |
26041789 |
catgtttgctcggaatttaagttggatgtttcaaataaaaaacggttacagattactccttttataaatatagaaacgtatctcttagttttatttgttc |
26041888 |
T |
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| Q |
211 |
ccaaaaatctctcttttttcctaacaacaagctttcaagtttct |
254 |
Q |
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| T |
26041889 |
ccaaaaatctttcttttttcctaacaacaagctttcaagtttct |
26041932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 26041698 - 26041741
Alignment:
| Q |
20 |
taagtaagataaaaagaacccgcataaagaggttaagataaagc |
63 |
Q |
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| T |
26041698 |
taagtaagataaaaagaacccgtataaagaggttaagataaagc |
26041741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 26048177 - 26048229
Alignment:
| Q |
199 |
ttttatttgttcccaaaaatctctcttttttcctaacaacaagctttcaagtttct |
254 |
Q |
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| T |
26048177 |
ttttatttgttcccaaaa---tctctcttttctttacaacaagctttcaagtttct |
26048229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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