View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5382_high_7 (Length: 241)
Name: NF5382_high_7
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 35477808 - 35478045
Alignment:
| Q |
4 |
agaggactatgtgggtaggtgtcacgttggggataaataaagagtcatattaaccggtgtcttaggacatcggttaaggaagccaacaaaaaaggtttta |
103 |
Q |
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| T |
35477808 |
agaggactatgtgggtaggtgtcagtttggggataaataaagggtcatactaaccggtgtctcaggacatcggtgaaggaagccaacaaaaaaggtttta |
35477907 |
T |
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| Q |
104 |
aattgaaaatgatacctttttgattcttgaagaattgattacataatttgcaatgcaatagctcgtatatttgcttccttaaccattaagtggccaaagt |
203 |
Q |
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| T |
35477908 |
aattgaaaatgatacttttttgattcttgaagaattgattacacaatttgcaatgcaatagctcgtatatttgcttccttaaccattaagtggccaaagt |
35478007 |
T |
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| Q |
204 |
aaagagtcactctagaaagtcaaatttgtggaccggct |
241 |
Q |
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| T |
35478008 |
aaagagtcactctagaaagtcaaatttgtggaccggct |
35478045 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 31862581 - 31862494
Alignment:
| Q |
101 |
ttaaattgaaaatgatacctttttgattcttgaagaattgattacataatttgcaatgcaatagctcgtatatttgcttccttaacca |
188 |
Q |
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| T |
31862581 |
ttaaattaaaaatgacacttttttgactcttgaagcattgattagacaattttcaatgcaaaagtttctatatttgcttccttaacca |
31862494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 31786724 - 31786785
Alignment:
| Q |
91 |
aaaaaaggttttaaattgaaaatgatacctttttgattcttgaagaattgattacataattt |
152 |
Q |
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| T |
31786724 |
aaaaaaagttttaaattgaaaatgacactttattgatttttgaaaaattgattacataattt |
31786785 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 14941650 - 14941736
Alignment:
| Q |
101 |
ttaaattgaaaatgatacctttttgattcttgaagaattgattacataatttgcaatgcaatagctcgtatatttgcttccttaacca |
188 |
Q |
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| T |
14941650 |
ttaaattaaaaatgacacttttttgacttttgaa-aattgattacacaattttcaatgtaaaagctactatatttgcttccttaacca |
14941736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 16464156 - 16464104
Alignment:
| Q |
136 |
aattgattacataatttgcaatgcaatagctcgtatatttgcttccttaacca |
188 |
Q |
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| T |
16464156 |
aattgattacacaatttccaatacaaaagctactatatttgcttccttaacca |
16464104 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 45996811 - 45996877
Alignment:
| Q |
47 |
gtcatattaaccggtgtcttag-gacatcggttaaggaagccaacaaaaaaggttttaaattgaaaa |
112 |
Q |
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| T |
45996811 |
gtcatattaaccggtgtctccgagacaccggttaaggaaataaaaaaaaaaggttttaaattgaaaa |
45996877 |
T |
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