View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5382_high_8 (Length: 239)
Name: NF5382_high_8
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382_high_8 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 35478522 - 35478308
Alignment:
| Q |
18 |
ctagtataggaacttaggattattatataattgaccacacaatgcaattctcaattcttaattacaccaagattatataagtgatattatatcacaatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35478522 |
ctagtataggaacttaggattattatataattgaccacacaatgcaattct-------taattacaccaagattatataagtgatattatatcacaatgt |
35478430 |
T |
|
| Q |
118 |
tttaaacaacagtgcggtcgcattaaggaattcacaattacataatgatgcatgcggattactattgtcgcggtctgaataaatcacgataacggaaact |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35478429 |
tttaaacaacagtgcggtcgcattaaggaattcacgattacataatgatgcatgtggattactattgtcgcggtctgaattaatcacgataacggaaact |
35478330 |
T |
|
| Q |
218 |
atcaatactgtttcgcgaccgt |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
35478329 |
atcaatactgtttcgcgaccgt |
35478308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University