View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5382_low_4 (Length: 398)
Name: NF5382_low_4
Description: NF5382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5382_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 30351352 - 30350994
Alignment:
| Q |
1 |
attattaaattaaattgaattaatgaaatatgtaacatgaatggattgatttcaaatatatat--ggtcgagatcaatcaacacnnnnnnnnnnnnnnaa |
98 |
Q |
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| T |
30351352 |
attattaaattaaattgatttaatgaaatatgtaacatgaatggattgatctcaaatatatatatggttgagatcaatcaacacttattttattttttaa |
30351253 |
T |
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| Q |
99 |
--tctgatatctgatctaagaattgattattccgagaacaattgacgcttgtaatgggtggttttattaatgacaaa-----ccaacnnnnnnnccaatg |
191 |
Q |
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| T |
30351252 |
aatttggtatctaatctaagaactgattattctgagaacaattgacgcttgtaatgggtggttttattaatgacaaataataccaacaaaaaa-ccaatg |
30351154 |
T |
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| Q |
192 |
gcatgttcctctaaaagttagctcttgaataatagacaaaattgtaaccaaaacagcctgcaaa-gtagaagnnnnnnnnggtagaatcactaatttata |
290 |
Q |
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| T |
30351153 |
gcatgttcctctaaaagttagctcttgaataatagacaaaattgtaaccacaacagcctgcaaaagtagaa-aaaaaaaaggtagaatcactaatttata |
30351055 |
T |
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| Q |
291 |
agatactttatatttgttgtactagtttagtgtttcaattattactttagaaaaacttatt |
351 |
Q |
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| T |
30351054 |
agatactttatatttgttgtcctagtttagtgtctcaattattaatttagaaaaacttatt |
30350994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30339331 - 30339271
Alignment:
| Q |
1 |
attattaaattaaattgaattaatgaaatatgtaacatgaatgga-ttgatttcaaatatat |
61 |
Q |
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||||||||| |||||||| |||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
30339331 |
attattaaaataaattgatttaatgaag-atgtaacatgaatggatttgatctcaaatatat |
30339271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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