View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5383-Insertion-3 (Length: 336)

Name: NF5383-Insertion-3
Description: NF5383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5383-Insertion-3
NF5383-Insertion-3
[»] chr5 (1 HSPs)
chr5 (59-336)||(8126511-8126788)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 59 - 336
Target Start/End: Original strand, 8126511 - 8126788
Alignment:
Q  59 acccttaagttgaggtgaccaatatatcaccacatttctttgttgtagtagggtatatttgcacagctgatatttttgcaagttccaacaactgatatgg 158  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8126511 acccttaagttaaggtgaccaatatatcaccacatttctttgttgtagcagggtatatttgcacagctgatatttttgcaagttccaacaactgacatgg 8126610  T
Q  159 atgcactataattaatatctagtccattagttagttgaacatgtatacaagaggagcaactggttgataattgatttatatgttgtattaaattataagc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8126611 atgcactataattaatatctagtccattagttagttgaacatgtatacaagaagagcaactggttgataattgatttatatgttgtattaaattataagc 8126710  T
Q  259 taccaataaaagtcaaaagctatttcactacttttaatagccatcacaagtgttggtttcttttgaattgtccattct 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8126711 taccaataaaagtcaaaagctatttcactacttttaatagccatcacaagtgttggtttcttttgaattgtccattct 8126788  T

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