View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5383_low_1 (Length: 228)

Name: NF5383_low_1
Description: NF5383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5383_low_1
NF5383_low_1
[»] chr3 (3 HSPs)
chr3 (77-194)||(27811690-27811807)
chr3 (80-188)||(55225707-55225815)
chr3 (79-194)||(38744439-38744554)
[»] chr8 (3 HSPs)
chr8 (78-194)||(16021763-16021879)
chr8 (78-194)||(16471986-16472101)
chr8 (78-194)||(16476557-16476672)
[»] chr6 (3 HSPs)
chr6 (77-194)||(5044842-5044959)
chr6 (19-75)||(4001745-4001802)
chr6 (192-228)||(4001803-4001839)
[»] chr1 (2 HSPs)
chr1 (85-194)||(22567610-22567719)
chr1 (76-194)||(49381363-49381481)
[»] chr7 (1 HSPs)
chr7 (124-185)||(3916097-3916158)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 27811807 - 27811690
Alignment:
Q  77 ttataggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaa 176  Q
    ||||||| |||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  27811807 ttataggttgtttggaacaacgtttaaaggccatttctcgcggcccgaggcaactttgaagtgaaaatatagaagctacaaaagacagcttcacacaaaa 27811708  T
Q  177 cgtggttttctttgcttt 194  Q
    ||||||||||||||||||    
T  27811707 cgtggttttctttgcttt 27811690  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 55225707 - 55225815
Alignment:
Q  80 taggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaacgt 179  Q
    |||||| ||||||||| | ||||||||||||||||||  |||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  55225707 taggctttttggaacagcatttaaaggtcatttctcgcagcccgagacaactttgaagtgaaaatatagaagctacaaaagacagcttcacacaaaacat 55225806  T
Q  180 ggttttctt 188  Q
    |||||||||    
T  55225807 ggttttctt 55225815  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 38744439 - 38744554
Alignment:
Q  79 ataggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaacg 178  Q
    ||||||||||||||||| | |||||| | ||||||||| || || ||||||  |||||||||||||||||||| |||||||||||| || ||||| ||||    
T  38744439 ataggctgtttggaacagcatttaaatgccatttctcgcgggccgaggcaacgttgaagtgaaaatatagaagttacaaaagacagtttcacacataacg 38744538  T
Q  179 tggttttctttgcttt 194  Q
    ||||||||||||||||    
T  38744539 tggttttctttgcttt 38744554  T

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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 16021879 - 16021763
Alignment:
Q  78 tataggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaac 177  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  16021879 tataggctgtttggaacagcgtttaaatgccatttctcgcggcctgaggcaactttgaagtgaaaatatagaagctacaaaagacagcttcacacaaaac 16021780  T
Q  178 gtggttttctttgcttt 194  Q
    |||||||||||||||||    
T  16021779 gtggttttctttgcttt 16021763  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 16472101 - 16471986
Alignment:
Q  78 tataggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaac 177  Q
    ||||||||||| |||||| || ||||| | ||||||||  |  ||||||||| ||| |||| ||||||||||||||| |||||||||||| ||||||||     
T  16472101 tataggctgtt-ggaacagcgattaaatgccatttctcacgatccaaggcaactttaaagtaaaaatatagaagctaaaaaagacagcttcacacaaaat 16472003  T
Q  178 gtggttttctttgcttt 194  Q
    |||||||||||||||||    
T  16472002 gtggttttctttgcttt 16471986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 16476672 - 16476557
Alignment:
Q  78 tataggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaac 177  Q
    ||||||||||| |||||| || ||||| | ||||||||  |  ||||||||| ||| |||| ||||||||||||||| |||||||||||| ||||||||     
T  16476672 tataggctgtt-ggaacagcgattaaatgccatttctcacgatccaaggcaactttaaagtaaaaatatagaagctaaaaaagacagcttcacacaaaat 16476574  T
Q  178 gtggttttctttgcttt 194  Q
    |||||||||||||||||    
T  16476573 gtggttttctttgcttt 16476557  T

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Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 5044842 - 5044959
Alignment:
Q  77 ttataggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaa 176  Q
    ||||||||| ||||||||| |||||||||| ||||||||| ||||| ||| || |||||||| |||||||||||||||||||||||||||| ||||||||    
T  5044842 ttataggctctttggaacagcgtttaaaggccatttctcgcggcccgaggtaactttgaagtaaaaatatagaagctacaaaagacagcttcacacaaaa 5044941  T
Q  177 cgtggttttctttgcttt 194  Q
    ||||||||||||||||||    
T  5044942 cgtggttttctttgcttt 5044959  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 4001745 - 4001802
Alignment:
Q  19 aacatacggatagaaaatgtaagcac-tgattgataagataatgaagacttttgtatt 75  Q
    ||||||| |||||||||||||| ||  |||| ||||||||||||||||||||||||||    
T  4001745 aacatacagatagaaaatgtaaacatgtgatcgataagataatgaagacttttgtatt 4001802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 4001803 - 4001839
Alignment:
Q  192 tttagactcgaaacaaagacatatttataagcattat 228  Q
    ||||||| |||||||||||||||||||||||||||||    
T  4001803 tttagacccgaaacaaagacatatttataagcattat 4001839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 22567719 - 22567610
Alignment:
Q  85 tgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaacgtggttt 184  Q
    ||||||||||| |||||||||| |||||||||  |||| |||||| ||| || |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  22567719 tgtttggaacagcgtttaaaggccatttctcgcagcccgaggcaactttaaaatgaaaatatagaagctacaaaagacaacttcacacaaaacgtggttt 22567620  T
Q  185 tctttgcttt 194  Q
    ||||||||||    
T  22567619 tctttgcttt 22567610  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 49381363 - 49381481
Alignment:
Q  76 cttataggctgtttggaacaacgtttaaaggtcatttctcgtggcccaaggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaa 175  Q
    |||||||||||||||||||| |||||||| | ||||||||  |  || |||||| ||| |||| ||||||||||||||| ||  |||||||| ||| |||    
T  49381363 cttataggctgtttggaacagcgtttaaatgccatttctcacgatccgaggcaactttaaagtaaaaatatagaagctaaaagggacagcttcacataaa 49381462  T
Q  176 acgtggttttctttgcttt 194  Q
    |||||||||||||||||||    
T  49381463 acgtggttttctttgcttt 49381481  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 3916158 - 3916097
Alignment:
Q  124 aggcaattttgaagtgaaaatatagaagctacaaaagacagctttacacaaaacgtggtttt 185  Q
    |||||| ||||| ||||||||| ||||||||||||||  ||||| |||| ||||||||||||    
T  3916158 aggcaaatttgatgtgaaaataaagaagctacaaaaggtagcttcacaccaaacgtggtttt 3916097  T

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