View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384-Insertion-2 (Length: 915)
Name: NF5384-Insertion-2
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 310 - 915
Target Start/End: Original strand, 34801046 - 34801637
Alignment:
| Q |
310 |
gttggtcgcatccttcaatctctattgttactaaagcgggaagacgagttggcaaatttccccgtaatcacaggaaaagaagcatatgactcatggggat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34801046 |
gttggtcgcatccttcaatctctattgttactaaagcgggaagacgagttggcaaatttccccgtaatcacaggaaaagaagcatatgactcatggggat |
34801145 |
T |
|
| Q |
410 |
gatgccacacttcccaagatgacgacgtatcatcaaacatcagattttcaagggaggtaaaaggtgtatcagaagagtaatcaccgttcttgaaaaattc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34801146 |
gatgccacacttcccaagatgacgacgtatcatcaaacatcagattttcaagggaggtaaaaggtgtatcagaagagtaatcaccgttcttgaaaaattc |
34801245 |
T |
|
| Q |
510 |
aggtccaatagtcttgagagagcttatttgtcc-aagcgatggaagcataaaacaattcttacaaccatacaaagatcttcaacccattctggaaatctt |
608 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34801246 |
aggtccaatagtcttgagagagcttatttgtccaaagcgatggaagcataaaacaattcttacaaccatacaaagatcttcaacccattctggaaatctt |
34801345 |
T |
|
| Q |
609 |
gtgccttttcaggtacttggcaggctgtaacttgcatagtatatccatctcattttgtgaattttcaacatcgtctgcagcatcttcagaccattccaac |
708 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34801346 |
gtgcct------------------ctgtaacttgcatagtatatccatctcattttgtgaattttcaacatcgtctgcagcatcttcagaccattccaac |
34801427 |
T |
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| Q |
709 |
tccaattcctcaaggtacttcttatctattatcctggcctccaacgcttcaaagctgttgttaatattctctaatttcttgattgaaagtgatccatgaa |
808 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34801428 |
tccaattcctcaaggtacttcttatctattatcctggcctccgacgcttcaaagctgctgttaacattctctaatttcttgattgaaagtgatccatgaa |
34801527 |
T |
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| Q |
809 |
gatctgaaagtgttcccagttc---cttgatccctttcgcttcatgcttgcccacaacaaagcaactcaaatgttgcagacgttttaattttctcatctc |
905 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34801528 |
gatctgaaagtgttcccagttccttcttgatcccttttgcttcatgctggcccacaacaaagcaactcaaatgttgcagacgttttaattttctcatctc |
34801627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 34800792 - 34801047
Alignment:
| Q |
8 |
acacaaatactgaagctggtggctttgttttgagaaatttagatttctacaattctggatgtacaaactctttaaggatgcaagtaaacaatctcctgga |
107 |
Q |
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| T |
34800792 |
acacaaatactgaagctggtggctttgttttgagaaatttagatttctacaattctggatgtacaaactctttaaggatgcaagtaaacaatctcctgga |
34800891 |
T |
|
| Q |
108 |
aatgatatttcagacgaacaattcttgatatctaatgttctaagagattttgatggcttcaaagatggactctgttatcttatctctcttcctttaattc |
207 |
Q |
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| T |
34800892 |
aatgatatttcagacgaacaattcctgatatctaatgttctaagag---------------aagttggactctgttatcttatctctcttcctttaattc |
34800976 |
T |
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| Q |
208 |
ttaattctttcaataaaagggggagtttccgcaatgctactttattgctttcatgtatcactaacctgtgt |
278 |
Q |
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| T |
34800977 |
ttaattctttcaataaaagggggagcttccgctatgctactttattgctttcatgcatcactaacctgtgt |
34801047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 717 - 902
Target Start/End: Original strand, 4313371 - 4313556
Alignment:
| Q |
717 |
ctcaaggtacttcttatctattatcctggcctccaacgcttcaaagctgttgttaatattctctaatttcttgattgaaagtgatccatgaagatctgaa |
816 |
Q |
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|||||||||||||||||| |||||| | ||||| | ||||||||| |||| ||||||||||||||||| | || || |||||||||||||||| |||| |
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| T |
4313371 |
ctcaaggtacttcttatccattatctttgcctctgaggcttcaaagttgtttgtaatattctctaatttcgtaatggatagtgatccatgaagatttgaa |
4313470 |
T |
|
| Q |
817 |
agtgttcccagttccttgatccctttcgcttcatgcttgcccacaacaaagcaactcaaatgttgcagacgttttaattttctcat |
902 |
Q |
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|||| ||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||| | ||||||||||||||| |
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| T |
4313471 |
agtgctcccaattccttgatccctttctcttgatgcttgcccacaacaaaggaactcagatgttgcaaattttttaattttctcat |
4313556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 624 - 915
Target Start/End: Complemental strand, 4255206 - 4254915
Alignment:
| Q |
624 |
cttggcaggctgtaacttgcatagtatatccatctcattttgtgaattttcaacatcgtctgcagcatcttcagaccattccaactccaattcctcaagg |
723 |
Q |
| |
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||||| ||||||||| ||||| ||||||||||| ||| ||||||||||| || || ||| ||||| | ||||||| ||| || || |||||| |
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| T |
4255206 |
cttggaaggctgtaatttgcaaagtatatccatttcactttgtgaatttgtaaaatggtcctttgcatcctgagaccataaaaaccataactcatcaagg |
4255107 |
T |
|
| Q |
724 |
tacttcttatctattatcctggcctccaacgcttcaaagctgttgttaatattctctaatttcttgattgaaagtgatccatgaagatctgaaagtgttc |
823 |
Q |
| |
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|||| |||||| |||||| | ||||| | |||||||||| |||||||| ||||||||||||||| || |||||||||| ||||||| |||||||||| |
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| T |
4255106 |
tactccttatccattatctttgcctctgatgcttcaaagccgttgttaacattctctaatttcttaatgaaaagtgatccgtgaagatttgaaagtgtta |
4255007 |
T |
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| Q |
824 |
ccagttccttgatccctttcgcttcatgcttgcccacaacaaagcaactcaaatgttgcagacgttttaattttctcatctctctaggcatc |
915 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| |||| | | |||||||||||||| | |||||||||| |
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| T |
4255006 |
tgagttccttgatccctttctcttcatgcttgtccacaacaaagtaacttaaatgctgcaaatgatttaattttctcatttttctaggcatc |
4254915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 712 - 915
Target Start/End: Complemental strand, 4248001 - 4247798
Alignment:
| Q |
712 |
aattcctcaaggtacttcttatctattatcctggcctccaacgcttcaaagctgttgttaatattctctaatttcttgattgaaagtgatccatgaagat |
811 |
Q |
| |
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|||| ||||||||| |||||||| || ||| | |||||| | ||||||||||||||| ||||||||||||||||| | || ||||||||||| ||||||| |
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| T |
4248001 |
aattgctcaaggtatttcttatccatcatctttgcctccgatgcttcaaagctgttggtaatattctctaatttcctaatggaaagtgatccgtgaagat |
4247902 |
T |
|
| Q |
812 |
ctgaaagtgttcccagttccttgatccctttcgcttcatgcttgcccacaacaaagcaactcaaatgttgcagacgttttaattttctcatctctctagg |
911 |
Q |
| |
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| ||||||| |||| ||||||||||||||| |||||||||||||||||||||| |||| | |||||||| | | |||||| ||||| |||||||| |
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| T |
4247901 |
ttcaaagtgtacccaattccttgatccctttgtcttcatgcttgcccacaacaaaataacttagatgttgcaaatgatttaatcggctcatttctctagg |
4247802 |
T |
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| Q |
912 |
catc |
915 |
Q |
| |
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|||| |
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| T |
4247801 |
catc |
4247798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 4255822 - 4255727
Alignment:
| Q |
47 |
tagatttctacaattctggatgtacaaactctttaaggatgcaagtaaacaatctcctggaaatgatatttcagacgaacaattcttgatatctaa |
142 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| | |||||||||| |
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| T |
4255822 |
tagatttctacaatccacgatggacaaactctttaaggatgcgggtaaacaatctcctggaaatgatatctcaaacgaacaatccctgatatctaa |
4255727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 279 - 377
Target Start/End: Complemental strand, 4248541 - 4248443
Alignment:
| Q |
279 |
atggaaggagcccttgggagagacgaagcaagttggtcgcatccttcaatctctattgttactaaagcgggaagacgagttggcaaatttccccgtaat |
377 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||| | ||||| ||||||||| |||||| | ||||| |||||| ||||||| |||| |||||||||| |
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| T |
4248541 |
atggaaggagcctttgggagagaagaagcaagttgattgcatcgttcaatctcaattgtttccaaagcaggaagatgagttggtaaatctccccgtaat |
4248443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 379 - 426
Target Start/End: Complemental strand, 4255448 - 4255401
Alignment:
| Q |
379 |
acaggaaaagaagcatatgactcatggggatgatgccacacttcccaa |
426 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
4255448 |
acaggaaaagaagcatatgaatcatggggatgatgccacacttgccaa |
4255401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 4255586 - 4255540
Alignment:
| Q |
274 |
tgtgtatggaaggagcccttgggagagacgaagcaagttggtcgcat |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||||| ||||| |
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| T |
4255586 |
tgtgtatggaagaagcccttgggagagaagaagaaagttggccgcat |
4255540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 754 - 907
Target Start/End: Complemental strand, 41934524 - 41934371
Alignment:
| Q |
754 |
gcttcaaagctgttgttaatattctctaatttcttgattgaaagtgatccatgaagatctgaaagtgttcccagttccttgatccctttcgcttcatgct |
853 |
Q |
| |
|
||||||||| ||||| | | ||||||||| |||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||| ||| |
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| T |
41934524 |
gcttcaaagttgttggtcacattctctaacttctcaattgaaagtgatccatgaagatttgaaagtgctcccaattccttgatccctttctcttcaggct |
41934425 |
T |
|
| Q |
854 |
tgcccacaacaaagcaactcaaatgttgcagacgttttaattttctcatctctc |
907 |
Q |
| |
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|||||||||||||||||||||||| ||||| | ||||||||| ||||| |||| |
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| T |
41934424 |
tgcccacaacaaagcaactcaaatattgcaaattttttaatttgctcatttctc |
41934371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 618 - 670
Target Start/End: Complemental strand, 41934657 - 41934605
Alignment:
| Q |
618 |
caggtacttggcaggctgtaacttgcatagtatatccatctcattttgtgaat |
670 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |
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| T |
41934657 |
caggtacttggcaggctgtaacttgcacagtatatccatctcactttgcgaat |
41934605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 774 - 862
Target Start/End: Original strand, 6058851 - 6058939
Alignment:
| Q |
774 |
attctctaatttcttgattgaaagtgatccatgaagatctgaaagtgttcccagttccttgatccctttcgcttcatgcttgcccacaa |
862 |
Q |
| |
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||||||||| ||| | |||||||| ||||||||||||| ||||||| ||||| ||||||||| | | | |||| ||||||||||||| |
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| T |
6058851 |
attctctaacttcctaattgaaagagatccatgaagatttgaaagtcctcccaattccttgatactatcctcttcttgcttgcccacaa |
6058939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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