View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384-Insertion-4 (Length: 204)
Name: NF5384-Insertion-4
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384-Insertion-4 |
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| [»] scaffold0445 (1 HSPs) |
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| [»] scaffold0425 (1 HSPs) |
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| [»] scaffold2089 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 6822366 - 6822172
Alignment:
| Q |
7 |
aagaaagacttagaggaagcaatgcaaaatattaatgatgaagtttaatattcatatgaaattaagaagaagaaaatgaatggtttgcttttttgtatca |
106 |
Q |
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| T |
6822366 |
aagaaagacttagaggaagcaatgcaaaatattaatgatgaagtttaatattcatatgaaattaagaagaagaaaatgaatggtttgcttttttgtatca |
6822267 |
T |
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| Q |
107 |
actggtatgaaagatgaagtttggtatcaaagaagagaaagtgagaagtaaaaaatgaatgcgatgatttactttttgtatcaactgattgaaca |
201 |
Q |
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| T |
6822266 |
actggtatgaaagatgaagtttggtatcaaagaagagaaagtgagaagtaaaaaatgaatgcgatgatttactttttgtatcaactgattgaaca |
6822172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 6510631 - 6510541
Alignment:
| Q |
112 |
tatgaaagatgaagtttggtatcaaagaagagaaagtgagaagtaaaaaatgaatgcgatgatttactttttgtatcaactgattgaacatat |
204 |
Q |
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| T |
6510631 |
tatgaaagatgaagtttggtatcaaagaaga--aagtgagaaggaaaaaatgaatgagatgatatactttttgtatcaactgattgaatatat |
6510541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 6750019 - 6750088
Alignment:
| Q |
135 |
aaagaagagaaagtgagaagtaaaaaatgaatgcgatgatttactttttgtatcaactgattgaacatat |
204 |
Q |
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| T |
6750019 |
aaagaagagaaagtaagaagtagaaaatgaatgagataatgtaatttttgtatcaactgattgaacatat |
6750088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 6551941 - 6551886
Alignment:
| Q |
112 |
tatgaaagatgaagtttggtatcaaagaagagaaagtgagaagtaaaaaatgaatg |
167 |
Q |
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| T |
6551941 |
tatgaaagatgaagtttggtatcaaagaagagaaagtaagaagtagaaaatcaatg |
6551886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 6471721 - 6471652
Alignment:
| Q |
135 |
aaagaagagaaagtgagaagtaaaaaatgaatgcgatgatttactttttgtatcaactgattgaacatat |
204 |
Q |
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| T |
6471721 |
aaagaagagaaagtaagaagtagaaaatgaatgagataatgcaatttttgtatcaactgattgaacatat |
6471652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 7576073 - 7576134
Alignment:
| Q |
112 |
tatgaaagatgaagtttggtatcaaagaagagaaagtgagaagtaaaaaatgaatgcgatga |
173 |
Q |
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| T |
7576073 |
tatgaaagatgaagtttggtattatggaagagaaagtaagatgtagaaaatgaatgagatga |
7576134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0445 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0445
Description:
Target: scaffold0445; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 8928 - 9036
Alignment:
| Q |
7 |
aagaaagacttagaggaagcaatgcaaaatattaatgatgaagttta-----atattcatatgaaattaagaagaagaaaatgaatggtttgcttttttg |
101 |
Q |
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| T |
8928 |
aagaaagacttagcggaagcaatgcaagatatcaacgatgaagtttagtttaatatgcatatgaaattaagaagaagaaaatgaatggtgtgcttttttc |
9027 |
T |
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| Q |
102 |
tatcaactg |
110 |
Q |
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| T |
9028 |
tatcaactg |
9036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 4891 - 4829
Alignment:
| Q |
112 |
tatgaaagatgaagtttggtatcaaagaagagaaagtgagaagtaaaaaatgaatgcgatgat |
174 |
Q |
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| T |
4891 |
tatgaaagatgaagtttggtatcaaagaagagaaagtaagaagtagaaaatcaatgagatgat |
4829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2089 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold2089
Description:
Target: scaffold2089; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 808 - 767
Alignment:
| Q |
7 |
aagaaagacttagaggaagcaatgcaaaatattaatgatgaa |
48 |
Q |
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| T |
808 |
aagaaagacttagaggaagcaatccaagatatcaatgatgaa |
767 |
T |
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