View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384-Insertion-5 (Length: 361)
Name: NF5384-Insertion-5
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384-Insertion-5 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 137 - 361
Target Start/End: Complemental strand, 964087 - 963863
Alignment:
| Q |
137 |
ttttattaaaacttcccgagtaactgatatacaaaatcactaattaacaaattgagctacaattcggccacaatttactctactcctctctaagtggcgc |
236 |
Q |
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| T |
964087 |
ttttattaaaacttcccgagtaattgatatacgaaatcactaattaacaaattgagctacaatttggccacagtttactgtactcctctctaagtaacgc |
963988 |
T |
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| Q |
237 |
tttattatctcttcttcaaataattatcatattaggttttacactttctttagtttcttgtttgttgcccctattttcattctccaatctccaacatgta |
336 |
Q |
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| T |
963987 |
tttattatctcttctccaaataattatcatattaggttttacactttctttagtttcttgtttgttgcccctattttcattctccaatctccaacatgta |
963888 |
T |
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| Q |
337 |
aatagtgctgcaacattctccaatc |
361 |
Q |
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| T |
963887 |
aatagtgctgcaacattctccaatc |
963863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 6476306 - 6476178
Alignment:
| Q |
72 |
ttatacgagaaaggagaactatct-tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaa |
170 |
Q |
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||||| |||||| ||||||| ||| |||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||| |||| |||||||||| |
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| T |
6476306 |
ttatatgagaaacgagaactttctatatcaaccatcagatttaattaacga-gtaagatttaattattttcttaaaaccttccgtgtaattgatatacaa |
6476208 |
T |
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| Q |
171 |
aatcactaattaacaaattgagctacaatt |
200 |
Q |
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| T |
6476207 |
aatcagaggttaataaattgagctacaatt |
6476178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 6745675 - 6745778
Alignment:
| Q |
96 |
tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaaaatcactaattaacaaattgagcta |
195 |
Q |
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| T |
6745675 |
tatcaaccatcagatttaattaaca-cgtaagatttaattattttcttaaaatcttccgtgtaattgatatacaaaattacaagttaataaattgagcta |
6745773 |
T |
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| Q |
196 |
caatt |
200 |
Q |
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||||| |
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| T |
6745774 |
caatt |
6745778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 6516436 - 6516308
Alignment:
| Q |
72 |
ttatacgagaaaggagaactatct-tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaa |
170 |
Q |
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| T |
6516436 |
ttatatgagaaacgagaactttctatatcaaccatcagatttaattaacg-cataagattaaattaccttcttaaaacattctgtataattgatatacaa |
6516338 |
T |
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| Q |
171 |
aatcactaattaacaaattgagctacaatt |
200 |
Q |
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| T |
6516337 |
aatcacaagttaataaattgagctacaatt |
6516308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 966941 - 966883
Alignment:
| Q |
78 |
gagaaaggagaactatcttatcaaccatcaaatttaattaacggcgaaagatttaattat |
137 |
Q |
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| T |
966941 |
gagaaacgagaattatcttatcaaccatcagatttaattaac-gcgtaagatttagttat |
966883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 967633 - 967591
Alignment:
| Q |
8 |
aaatattttctttttcgtttctcatgaattatatacatatatat |
51 |
Q |
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| T |
967633 |
aaatattttctttttcgtttctcat-aattatatatatatatat |
967591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 14216818 - 14216678
Alignment:
| Q |
79 |
agaaaggagaactatct-tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaaaatcact |
177 |
Q |
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||||| ||||| ||||| |||||| ||||| |||||||||||| || ||||||||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
14216818 |
agaaacgagaattatctatatcaatcatcatatttaattaacg-cgtaagatttaattattttattaaaatctcccgtgtaattgatatacaaaatcaca |
14216720 |
T |
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| Q |
178 |
aattaacaaattgagctacaattcggccacaatttactctac |
219 |
Q |
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| T |
14216719 |
aattaacaaaatgagctgcaatttggccacaatttactctac |
14216678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 17247527 - 17247632
Alignment:
| Q |
72 |
ttatacgagaaaggagaactatct-tatcaaccatcaaatttaattaacggcgaaagatttaattattttattaaaacttcccgagtaactgatatacaa |
170 |
Q |
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||||| || ||| ||||||| ||| ||||||||||| |||| ||||||| || ||||||||||||||| ||||||||| ||| |||| |||||||||| |
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| T |
17247527 |
ttataagaaaaacgagaactttctatatcaaccatctgatttgattaacg-cgtgagatttaattatttttttaaaactttccgtgtaattgatatacaa |
17247625 |
T |
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| Q |
171 |
aatcact |
177 |
Q |
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||||||| |
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| T |
17247626 |
aatcact |
17247632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 23857654 - 23857753
Alignment:
| Q |
237 |
tttattatctcttcttcaaataattatcatattaggttttacactttctttagtttcttgtttgttgcccctattttcattctccaatctccaacatgta |
336 |
Q |
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| T |
23857654 |
tttattgtctcttctctaaataattaccggattatgttttatacgt-ctttggtttcttgtttgttgccgccatttccattctccaatatctaacatgta |
23857752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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