View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5384-Insertion-7 (Length: 355)

Name: NF5384-Insertion-7
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5384-Insertion-7
NF5384-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-355)||(51529998-51530351)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 51530351 - 51529998
Alignment:
Q  8 ctccctccctctctgggcttgttatacgagatagtcacaccgcaagagaacgacgttgaaagt------caatgaaattcattccaaggtctggtatctc 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||    
T  51530351 ctccctccctctctgggcttgttatacgagatagtaacaccgcaagagaacgacgttgaaagtgtttatcaatgaaattcattccaaggtctcgtatctc 51530252  T
Q  102 tttcatggcattcaaaatcaacatattcaaactccgttattcttcttcttctcacacactcgcagatacacttgtctccatcttcactaccaaaggaccc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51530251 tttcatggcattcaaaatcaacatattcaaactccgttattcttcttcttctcacacactcgcagatacacttgtctccatcttcactaccaaaggaccc 51530152  T
Q  202 accgcacctgaactcaccaacttcgcacctgaactcacccctcatctcgtcgagtccgttctcacacgcctccgcagttggcgcgtcgctcaaaccttct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51530151 accgcacctgaactcaccaacttcgcacctgaactcacccctcatctcgtcgagtccgttctcacacgcctccgcagttggcgcgtcgctcaaaccttct 51530052  T
Q  302 tccattgggcttccaatcaacgccattatcaccacacttccttcaccttcaacg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51530051 tccattgggcttccaatcaacgccattatcaccacacttccttcaccttcaacg 51529998  T

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