View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384_high_14 (Length: 250)
Name: NF5384_high_14
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 6832164 - 6832277
Alignment:
| Q |
109 |
atttccatgtaaatgtttacatttatttctatacatttagttgtctcataaattaactcaaaaataattgttcaaataacatatcactaaaacaaatcag |
208 |
Q |
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| T |
6832164 |
atttccatgtcaatgtttacatttatttctatacatttagttgtctcataaattatctcaaaaataattgttcaaataacatatcactaaaagaaatcag |
6832263 |
T |
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| Q |
209 |
ttacaacatttttt |
222 |
Q |
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||||| |||||||| |
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| T |
6832264 |
ttacaccatttttt |
6832277 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 6832063 - 6832096
Alignment:
| Q |
12 |
tattctccatttttttgagatagatagataggta |
45 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6832063 |
tattctccatttttttgagatagatagataggta |
6832096 |
T |
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