View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384_high_2 (Length: 471)
Name: NF5384_high_2
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_high_2 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 189 - 471
Target Start/End: Complemental strand, 34868782 - 34868500
Alignment:
| Q |
189 |
tttgtacacattttttcttataagctgcagaaaaaccttattatcctcaatgactcgtgcccgtatccattctcttataccatgatatgattgttttatt |
288 |
Q |
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| T |
34868782 |
tttgtacacattttttcttataagctgcagaaaaaccttattatcctcaatgacttgtgcccatatccattctcttataccatgatatgattgttttatt |
34868683 |
T |
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| Q |
289 |
tgttttagaagttgcttcaaattttaaactgatatgtcatcaatgttttgctttatggtgcaagtatattttattaatcacggatattgattaaaatttt |
388 |
Q |
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| T |
34868682 |
tgttttagaagttgcttcaaattttaaactgatatgtcatcaatgttttgctttatgatgcaagtatattttattaatcacggatattgattaaaatttt |
34868583 |
T |
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| Q |
389 |
aaactaatatgttcatcaattaacttgtgtggctttctaacttcatctccttcttgttgttgtatccttcaacctttaatgtt |
471 |
Q |
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| T |
34868582 |
aaactaatatgttcatcaattaacttgtgtggctttctaacttcatctccttcttgttgttgtatccttcaacctttaatgtt |
34868500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 34868926 - 34868779
Alignment:
| Q |
19 |
tcttgcactgactctgcaggtggtaatgtttctggttctcatatctgcgggtgtccacagcggcctggccagcttccgtgacacctgcgagaaactcatc |
118 |
Q |
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| T |
34868926 |
tcttgcactgactctgcaggtggtaatgtttctggttctcatatctgcgggtgtccacagcggcctggccagcttccgtgacacctgcgagaaactcatc |
34868827 |
T |
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| Q |
119 |
ggagatcgagcttaccgtgttcgttttgcaggaacatcactacctttg |
166 |
Q |
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| T |
34868826 |
ggagatcgagcttaccgtgttcgttttgcaggaacatcactacctttg |
34868779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 34876198 - 34876035
Alignment:
| Q |
31 |
tctgcaggtggtaatgttt---ctggttctcatatctgcgggtgtccacagcggcctggccagcttccgtgacacctgcgagaaactcatcggagatcga |
127 |
Q |
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| T |
34876198 |
tctgcaggtggtaatgttggtcctggttctcatatttgcgggtgtccacagtggcctggccagcttccgtgacaccggagagaaactcatcggtgaacga |
34876099 |
T |
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| Q |
128 |
gcttaccgtgttcgttttgcaggaacatcactacctttggctctctaaccatgactgtgagtttgt |
193 |
Q |
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| T |
34876098 |
gcttaccgtgttctttttgcaggcacatcgctacctttggctctc--acaatgattgtgagtttgt |
34876035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 468
Target Start/End: Complemental strand, 34875804 - 34875746
Alignment:
| Q |
410 |
aacttgtgtggctttctaacttcatctccttcttgttgttgtatccttcaacctttaat |
468 |
Q |
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| T |
34875804 |
aacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacctttaat |
34875746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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