View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384_high_5 (Length: 349)
Name: NF5384_high_5
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 10922305 - 10921967
Alignment:
| Q |
1 |
ccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaaatcgactatagttgttaaaccaattgaatctgtggttagacttg |
100 |
Q |
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| T |
10922305 |
ccttgtgaatgataagcgttggtgatggtaaattatacaggtagtatacatagaaaatcgactatagttgttaaaccaattgaatctgtggttcgacttg |
10922206 |
T |
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| Q |
101 |
attttcacaaca-----ataaatacgatatgtatctacaaattttgcctccaataggcggtgaggttgaattttgataacatgaaataagcactaaaaca |
195 |
Q |
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| T |
10922205 |
attttcacaacactgcaataaatacgatatgtatctacaaattttgcctccaataggcggtgaggttgaagtttgataacatgaaataagcactaaaaca |
10922106 |
T |
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| Q |
196 |
atcttaaaagaacgtaaactaagtagagatatattatagaaactaaaccaatattggaaattacaagcgttgttcatattattggcaaattagacctgaa |
295 |
Q |
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| T |
10922105 |
atcttaaaaaaa-gtaaactaagtagagatatattatagaaactaaaccaatattggaaattataagcgttgttcatattattggcaaattagacctgaa |
10922007 |
T |
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| Q |
296 |
aaaattattttcccatatatttcttgtcaaataaaccctg |
335 |
Q |
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| T |
10922006 |
aaaattattttcccatatatttattgtcaaataaaccctg |
10921967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 10950418 - 10950377
Alignment:
| Q |
266 |
tgttcatattattggcaaattagacctgaaaaaattattttc |
307 |
Q |
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| T |
10950418 |
tgttcatattattgtcaaattagacctgaaaattttattttc |
10950377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 10950504 - 10950452
Alignment:
| Q |
219 |
tagagatatattatagaaactaaaccaatattggaaattacaagcgttgttca |
271 |
Q |
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| T |
10950504 |
tagagatatataatagaaactaaactaagattcgaaataacaagtgttgttca |
10950452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 139
Target Start/End: Complemental strand, 10951130 - 10951102
Alignment:
| Q |
111 |
caataaatacgatatgtatctacaaattt |
139 |
Q |
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| T |
10951130 |
caataaatacgatatgtatctacaaattt |
10951102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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