View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5384_low_1 (Length: 596)

Name: NF5384_low_1
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5384_low_1
NF5384_low_1
[»] scaffold0341 (4 HSPs)
scaffold0341 (106-586)||(538-1015)
scaffold0341 (106-586)||(8191-8668)
scaffold0341 (19-95)||(478-554)
scaffold0341 (19-95)||(8131-8207)
[»] chr1 (11 HSPs)
chr1 (106-586)||(6506513-6506990)
chr1 (139-458)||(6516855-6517168)
chr1 (158-586)||(6521745-6522161)
chr1 (134-458)||(6512451-6512769)
chr1 (19-95)||(6506453-6506529)
chr1 (499-584)||(47778065-47778150)
chr1 (511-583)||(6517215-6517287)
chr1 (523-586)||(6523747-6523810)
chr1 (523-586)||(47781971-47782034)
chr1 (499-586)||(47788185-47788272)
chr1 (298-339)||(47759914-47759955)
[»] chr7 (1 HSPs)
chr7 (547-586)||(722266-722305)


Alignment Details
Target: scaffold0341 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 106 - 586
Target Start/End: Original strand, 538 - 1015
Alignment:
Q  106 ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 205  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  538 ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 634  T
Q  206 taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  635 taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 734  T
Q  306 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  735 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 834  T
Q  406 atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc 505  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  835 aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc 934  T
Q  506 ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 586  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  935 ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 106 - 586
Target Start/End: Original strand, 8191 - 8668
Alignment:
Q  106 ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 205  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8191 ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 8287  T
Q  206 taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8288 taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 8387  T
Q  306 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8388 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 8487  T
Q  406 atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc 505  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8488 aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc 8587  T
Q  506 ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 586  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8588 ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 8668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 478 - 554
Alignment:
Q  19 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgttggggaaggtgttggtgatggtga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  478 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga 554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 8131 - 8207
Alignment:
Q  19 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgttggggaaggtgttggtgatggtga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  8131 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga 8207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 106 - 586
Target Start/End: Original strand, 6506513 - 6506990
Alignment:
Q  106 ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 205  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506513 ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc 6506609  T
Q  206 taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506610 taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc 6506709  T
Q  306 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6506710 aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T
Q  406 atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc 505  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506810 aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc 6506909  T
Q  506 ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 586  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506910 ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 6506990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 139 - 458
Target Start/End: Original strand, 6516855 - 6517168
Alignment:
Q  139 gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgt 238  Q
    |||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| |||       ||| || ||||    
T  6516855 gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcact------catcctgttgt 6516948  T
Q  239 cacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttg 338  Q
     ||||||  ||| |||||| |||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||||||| | ||| || ||||||||||    
T  6516949 tacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttg 6517048  T
Q  339 attattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagc 438  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| ||    
T  6517049 attattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgc 6517148  T
Q  439 cctttatcaaattcatcttc 458  Q
     |||||||||||||||||||    
T  6517149 actttatcaaattcatcttc 6517168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 158 - 586
Target Start/End: Complemental strand, 6522161 - 6521745
Alignment:
Q  158 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc 257  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||     |||||| |||||||||||  |||||    
T  6522161 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acc-----tattgttacaacaatttgaaatttc 6522068  T
Q  258 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc 357  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||| |    
T  6522067 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacc 6521968  T
Q  358 acatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatctt 457  Q
     ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||| ||| |||   |||| | |||| | ||| |||        
T  6521967 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactca---- 6521872  T
Q  458 cgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcattt 557  Q
      || || ||||||||||| |    ||||||  |||     |||||||| ||||| |||| ||||||||||||||||| |||| |||||||||||||||     
T  6521871 --acctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattc 6521774  T
Q  558 ttcatcgtcgtaccatccaattgcttctt 586  Q
    |||||||| ||||||||||||||||||||    
T  6521773 ttcatcgttgtaccatccaattgcttctt 6521745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 134 - 458
Target Start/End: Original strand, 6512451 - 6512769
Alignment:
Q  134 atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattct 233  Q
    ||||||| |||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| || |||| ||||      ||  ||    
T  6512451 atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacc------caacct 6512544  T
Q  234 attgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatg 333  Q
     |||| ||||||  |||||||| |||||||||||||  ||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| ||||     
T  6512545 gttgttacaacatcttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatata 6512644  T
Q  334 gtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttt 433  Q
    ||||||||||||||| |||||| | ||||| |||| |||||||||||||||||||| || || |||| |||| ||||| ||||||||| ||| |||||||    
T  6512645 gtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttt 6512744  T
Q  434 tcagccctttatcaaattcatcttc 458  Q
    ||||  |||||||||||||||||||    
T  6512745 tcagtactttatcaaattcatcttc 6512769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6506453 - 6506529
Alignment:
Q  19 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgttggggaaggtgttggtgatggtga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6506453 gaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga 6506529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 499 - 584
Target Start/End: Complemental strand, 47778150 - 47778065
Alignment:
Q  499 gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 584  Q
    |||||||| ||||||||||  | |||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||    
T  47778150 gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttc 47778065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 583
Target Start/End: Original strand, 6517215 - 6517287
Alignment:
Q  511 tcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgctt 583  Q
    |||| || ||||||||||||||||  |||| |||||||||||||| | ||||| |||||||| ||||||||||    
T  6517215 tcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgctt 6517287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 523 - 586
Target Start/End: Complemental strand, 6523810 - 6523747
Alignment:
Q  523 aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 586  Q
    ||||| ||||||| |||  |||||||||||||||||||||| || ||||| |||||||||||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctt 6523747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 523 - 586
Target Start/End: Complemental strand, 47782034 - 47781971
Alignment:
Q  523 aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 586  Q
    ||||| ||||||| |||  |||| ||||||||||| ||||| ||||||||||||||||||||||    
T  47782034 aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctt 47781971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 586
Target Start/End: Complemental strand, 47788272 - 47788185
Alignment:
Q  499 gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 586  Q
    |||||||| ||||| || | ||| | ||||||||||| |||  |||| ||||| ||||| ||||| ||||||||||||||||||||||    
T  47788272 gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctt 47788185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 47759914 - 47759955
Alignment:
Q  298 gacaaatcaggtgtgcattgaacaagagcaaatatggtttga 339  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  47759914 gacaaatcaggtgtgcactgaacaagaccatatatggtttga 47759955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 586
Target Start/End: Complemental strand, 722305 - 722266
Alignment:
Q  547 aacatgcatttttcatcgtcgtaccatccaattgcttctt 586  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttctt 722266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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