View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384_low_13 (Length: 279)
Name: NF5384_low_13
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 32980336 - 32980582
Alignment:
| Q |
18 |
aagagtttgtaggtaaatgaaaaaatgtagttcttattttcaaaa-caatgagggaaggtttttgttaatttaaatttaaggtagctgtttattgttttg |
116 |
Q |
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| T |
32980336 |
aagagtttgtaggtaaatgaaaaaatgtagttcttattttcaatttctat-----------tttgttaatttaaatttaaggtagctgtttattgttttg |
32980424 |
T |
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| Q |
117 |
tgagtgagtatagtgtatgtttggttcccgcttttggacaagccaaaattgattctaggtataaaattgattttaacatgttttgttgttctttagtaga |
216 |
Q |
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| T |
32980425 |
tgagtgagtatagtgtatgtttggttcccgcttttggacaagccaaaattgattctaggtataaaattgattttaacatgttttgttgttttttagtaga |
32980524 |
T |
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| Q |
217 |
agtgattttgctgcagaattgattttacttgaagttaagactcatatcctttgcttct |
274 |
Q |
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| T |
32980525 |
agtgattttgctgcagaattgattttacttgaagttaagatttatatcttttgattct |
32980582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 32981836 - 32981876
Alignment:
| Q |
18 |
aagagtttgtaggtaaatgaaaaaatgtagttcttattttca |
59 |
Q |
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| T |
32981836 |
aagagtttgtaggtaaatg-aaaaatgtagttcttattttca |
32981876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 2635084 - 2635178
Alignment:
| Q |
159 |
ccaaaattgattctag--gtataaaattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaag |
250 |
Q |
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| T |
2635084 |
ccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgattatgcttgaag |
2635178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 578872 - 578945
Alignment:
| Q |
178 |
taaaattgattttaacatgttttgttgttctttagtagaagtgattttgc-tgcagaattgattttacttgaag |
250 |
Q |
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| T |
578872 |
taaaattgattttgacatgtttagttgtttttaagtagaaataattttgcttgtagaattgatactacttgaag |
578945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 12306920 - 12306968
Alignment:
| Q |
179 |
aaaattgattttaacatgttttgttgttctttagtagaagtgattttgc |
227 |
Q |
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| T |
12306920 |
aaaattgattttgacatgtttggttgctcttgagtagaattgattttgc |
12306968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 3352021 - 3352093
Alignment:
| Q |
181 |
aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt |
252 |
Q |
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| T |
3352021 |
aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt |
3352093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 9943344 - 9943391
Alignment:
| Q |
159 |
ccaaaattgattct--aggtataaaattgattttaacatgttttgttg |
204 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||| |||| |
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| T |
9943344 |
ccaaaattgattctgaaggtgtaaaattgattttaacatgtttggttg |
9943391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 34387833 - 34387761
Alignment:
| Q |
181 |
aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt |
252 |
Q |
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|||||||| | |||| |||||||||| || ||||||| |||| ||| || || |||||||||||||||||||| |
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| T |
34387833 |
aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt |
34387761 |
T |
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