View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384_low_19 (Length: 237)
Name: NF5384_low_19
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34800576 - 34800796
Alignment:
| Q |
1 |
gacatacaatgatgtcaaattgggcgcggacaatccttctcttgggaatgatacaaatttggggcactctctaatttcattatcaacgaaattttgaaga |
100 |
Q |
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| T |
34800576 |
gacatacaatgatgtcaaattgggcgcggacaatccttctcttgggaatgatacaaatttggggcactctctaatttcattatcaacgaaattttgaaga |
34800675 |
T |
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| Q |
101 |
accttcgaagaggaaagacattctatgttttcacagtttctgatgaagagatgattaaagattcaaaagggtgtctagtgagagagtgttatgagataat |
200 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800676 |
accttcgaagagtaaagacattttatgttttcacagtttctgatgaagagatgattaaagattcaaaagggtgtctagtgagagagtgttatgagataat |
34800775 |
T |
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| Q |
201 |
cacaactcctatctatacaca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34800776 |
cacaactcctatctatacaca |
34800796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4248963 - 4248749
Alignment:
| Q |
1 |
gacatacaatgatgtcaaattgggcgcggacaatccttctcttgggaatgatacaaatttggggcactctctaatttcattatcaacgaaattttgaaga |
100 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| || ||||| ||| ||||||| | |||||||||| |
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| T |
4248963 |
gacatacaatgatgtcaagttgggcgcagacaatccttctctcttgaatgatacaaatttggggcagtcactaatgtcaatatcaacaatattttgaaga |
4248864 |
T |
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| Q |
101 |
accttcgaagaggaaagacattctatgttttcacagtttctgatgaagagatgattaaagattcaaaagggtgtctagtgagagagtgttatgagataat |
200 |
Q |
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| T |
4248863 |
atcttcgaagcggaaagacattctagattttcacacttgctgatgacaagatga-tagagatttggaagggtgtccagttggaga--gttaagagagaac |
4248767 |
T |
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| Q |
201 |
cacaactcctatctatac |
218 |
Q |
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|||||||||||||||||| |
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| T |
4248766 |
cacaactcctatctatac |
4248749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4256083 - 4255940
Alignment:
| Q |
1 |
gacatacaatgatgtcaaattgggcgcggacaatccttctcttgggaatgatacaaatttggggcactctctaatt-tcattatcaacgaaattttgaag |
99 |
Q |
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|||||||||||||||||| |||||||| | || |||| ||| ||||||||||||||| |||||||| || ||||| | ||| | ||||| ||||||||| |
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| T |
4256083 |
gacatacaatgatgtcaagttgggcgcaggcagtcctgctcctgggaatgatacaaaattggggcagtccttaattgtaattgt-aacgagattttgaag |
4255985 |
T |
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| Q |
100 |
aaccttcgaagaggaaagacattctatgttttcacagtttctgat |
144 |
Q |
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| T |
4255984 |
aatattcgaaatagaaagacactttatgtttccacagtttctgat |
4255940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 4312331 - 4312395
Alignment:
| Q |
2 |
acatacaatgatgtcaaattgggcgcggacaatccttctcttgggaatgatacaaatttggggca |
66 |
Q |
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|||||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
4312331 |
acatacaatgatttcaagttgggcgcagacaatccttctcttccgaatgatacaaatttggggca |
4312395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 4305302 - 4305350
Alignment:
| Q |
15 |
tcaaattgggcgcggacaatccttctcttgggaatgatacaaatttggg |
63 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4305302 |
tcaagttgggcgcagacaatccttctcttgggaatgatacaaatttggg |
4305350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 41935594 - 41935471
Alignment:
| Q |
15 |
tcaaattgggcgcggacaatccttctcttgggaatgatacaaatttggggcactctctaatttcattatcaacgaaattttgaagaaccttcgaagagga |
114 |
Q |
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|||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| | ||| || || ||||||||| | ||| |||| ||| |
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| T |
41935594 |
tcaagttgggcgcagacaatccttctcttgagaatgatacaaatttggggcaatctctaattataatatgaaagagattttgaaggatctttgaagcgga |
41935495 |
T |
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| Q |
115 |
aagacattctatgttttcacagtt |
138 |
Q |
| |
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|| | |||| ||| ||| |||||| |
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| T |
41935494 |
aacatattcaatgcttttacagtt |
41935471 |
T |
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