View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5384_low_20 (Length: 223)
Name: NF5384_low_20
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 47652940 - 47652751
Alignment:
| Q |
17 |
cacagaaattgggtggtgaaagaaaggaaaataagagatatgatatcacatcaaaggaaggaaagttcattcacggatatacaaaattacaaaaactaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47652940 |
cacagaaattgggtggtgaaagaaaggaaaataagagatatgatatcacatcaaaggaaggaaagttcattcacggatatacaaaattacaaaaactaag |
47652841 |
T |
|
| Q |
117 |
aaaactttataaagtctttatcccatcacggacatgcaaacaccaatattacaatacatcacaatcagagagacatgtacagtagctact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47652840 |
aaaactttataaagtctttatcccatcacggacatgcaaacaccaatattacaatacatcacaatcagagagacatgtacagtagctact |
47652751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University