View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5384_low_21 (Length: 205)
Name: NF5384_low_21
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 44084708 - 44084871
Alignment:
| Q |
12 |
agtgagaagaagaataataagatgaaagaggtgccaaagaattagattatgacaatacgacaattaaaattcaaattttaatcggaagaagtgtccacat |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44084708 |
agtgtgaagaagaataataagatgaaagaggtgccaaagaattagattatgacaatacgacaattaaaattaaaattttaatcggaagaagtgtccacat |
44084807 |
T |
|
| Q |
112 |
ttccaatatgacattgtctcgactagattatatccggtggagggaaaaagaaacagaaatgagt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44084808 |
ttccaatatgacattgtctcgactagattatatccggtggagggaaaaagaaacagaaatgagt |
44084871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University