View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5384_low_4 (Length: 364)

Name: NF5384_low_4
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5384_low_4
NF5384_low_4
[»] chr3 (14 HSPs)
chr3 (1-347)||(967628-967986)
chr3 (15-117)||(1931903-1932005)
chr3 (4-117)||(3745169-3745282)
chr3 (12-152)||(955518-955653)
chr3 (24-117)||(2651170-2651263)
chr3 (21-117)||(1937720-1937816)
chr3 (21-117)||(3753785-3753881)
chr3 (21-117)||(4142892-4142988)
chr3 (3-117)||(7432821-7432935)
chr3 (20-117)||(1891803-1891900)
chr3 (21-117)||(4158702-4158798)
chr3 (1-116)||(13478821-13478936)
chr3 (14-117)||(1941324-1941427)
chr3 (160-218)||(955440-955498)
[»] chr8 (2 HSPs)
chr8 (14-117)||(19727118-19727221)
chr8 (3-116)||(31145142-31145255)
[»] chr5 (8 HSPs)
chr5 (21-114)||(23765012-23765105)
chr5 (21-114)||(23814860-23814953)
chr5 (21-114)||(23774825-23774918)
chr5 (21-114)||(23861778-23861871)
chr5 (21-114)||(23754791-23754884)
chr5 (21-114)||(23820246-23820339)
chr5 (21-114)||(23691163-23691256)
chr5 (21-117)||(11081380-11081476)
[»] chr4 (1 HSPs)
chr4 (5-116)||(20020529-20020640)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 967986 - 967628
Alignment:
Q  1 tggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  967986 tggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaat 967887  T
Q  101 gagatcgaaaggaagag----------cggcatgtgaagcgatggtgatgatgttagggtttcagttggcctcctctcaatggagattattgcttcggtc 190  Q
    |||||||||||||||||          ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  967886 gagatcgaaaggaagagtcggaagtggcggcatgtgaagcgatggtgacgatgttagggtttcagttggcctcctctcaatggagattgctgcttcggtc 967787  T
Q  191 agtaatggagaagaaacggcgtcgtcgtattttgcttggtagcccttgtcgctacccatgttggagaagaaactgtgacctgcaccgatttgagagaggc 290  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  967786 agtaatggagaagaaacggcatcgtcgtattttgcttggcagcccttgtcgctacccatgttggagaagaaactgtgaactgcaccgatttgagagaggc 967687  T
Q  291 tgagcgaaggaagtaggttagagag--acctatctatacatatttttcttgacaaatat 347  Q
    |||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||    
T  967686 tgagcgaaggaagtaggttagagagatacctatctatatatatctttcttgacaaatat 967628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 1931903 - 1932005
Alignment:
Q  15 tcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    |||| ||||||||||||| | |||||||| || || ||||||  ||  |||||||| || ||||||||||| || |||||||||||||||||||||||||    
T  1931903 tcagagattagagaattctatgacttgcaaacgcaccggaatctcacaaggagcttcacggatagcctacagaggatttctggaatgagatcgaaaggaa 1932002  T
Q  115 gag 117  Q
    |||    
T  1932003 gag 1932005  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 3745282 - 3745169
Alignment:
Q  4 caaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgag 103  Q
    ||||||| | |||||  |||||||||||||| |||||||| |||||||||||||| | || || ||| |||| |||||||||||  |||||||||||||     
T  3745282 caaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaatgac 3745183  T
Q  104 atcgaaaggaagag 117  Q
     ||| |||||||||    
T  3745182 gtcggaaggaagag 3745169  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 955653 - 955518
Alignment:
Q  12 gaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaag 111  Q
    ||||||| ||| ||||||||||| ||||| || || ||||| | ||| | |||||||||||||  ||||||||| || ||||||| || |||||| ||||    
T  955653 gaatcagagataagagaattccaagacttacaaacgcatcgaagttgaaggaggagctttacctgtagcctacagaggatttctgaaacgagatcaaaag 955554  T
Q  112 gaagagcggcatgtgaagcgatggtgatgatgttagggttt 152  Q
    |||||     ||| |||| ||||||||||||||||||||||    
T  955553 gaaga-----atgggaagtgatggtgatgatgttagggttt 955518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 2651170 - 2651263
Alignment:
Q  24 agagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 117  Q
    ||||||||||| | |||||| |||||||| | ||| | |||||||||||||| || ||||| |||||||||| |||| || |||||||||||||    
T  2651170 agagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctacgtagaatttcttgaataaggtcgaaaggaagag 2651263  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 1937720 - 1937816
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 117  Q
    |||||||||||| | |||||||| || || ||||||  || |||||| || |||||||||||| | || ||||||||||||||||| ||||||||||    
T  1937720 attagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaagag 1937816  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 3753881 - 3753785
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 117  Q
    |||||| ||||||| |||||||| |||||||||||| | | || || |||||||| || ||||||||| |||||||||||||  ||| |||||||||    
T  3753881 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagag 3753785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 4142892 - 4142988
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 117  Q
    |||||||||||||| |||||||| |||||||||||| | | || || |||||| | |||||||||||  |||||||||||||  ||| |||||||||    
T  4142892 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagag 4142988  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 7432821 - 7432935
Alignment:
Q  3 gcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatga 102  Q
    ||||| || |||| || ||| |||||||||||||||||||| |  ||||| ||||| | ||| ||||| ||||  |||||| | || ||||||| |||||    
T  7432821 gcaaaattggaattagagatcagagaattccacgacttgcagatgcatcgcaattgaaggagaagcttcaccggaagcctagagagtatttctgtaatga 7432920  T
Q  103 gatcgaaaggaagag 117  Q
    |||||||||||||||    
T  7432921 gatcgaaaggaagag 7432935  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 1891803 - 1891900
Alignment:
Q  20 gattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 117  Q
    ||||||||||||||| |||||||| ||| |||||| ||| | ||||||||| || |  || |||  ||||||||||| ||||||||| ||||||||||    
T  1891803 gattagagaattccatgacttgcagacagatcggagttgaaggaggagcttcactggaagtctagttagaatttctgaaatgagatccaaaggaagag 1891900  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 4158702 - 4158798
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 117  Q
    |||||||||||||| |||||||| |||||| ||||| | | || || |||||||| |||||||||||  |||||| ||||||  ||| |||||||||    
T  4158702 attagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccggtagcctacatatgatttctagaatgacgtcggaaggaagag 4158798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 13478936 - 13478821
Alignment:
Q  1 tggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaat 100  Q
    ||||||||||   ||||||||| | |||||||||| |||| |  |||||||| | ||| | ||||||||| || | |||||||||||||||||||  |||    
T  13478936 tggcaaatttgcgatcagtgataaaagaattccacaacttactgacacatcgaagttgaaggaggagcttcacgggtagcctacatagaatttctataat 13478837  T
Q  101 gagatcgaaaggaaga 116  Q
    ||| |||| |||||||    
T  13478836 gaggtcgagaggaaga 13478821  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 1941324 - 1941427
Alignment:
Q  14 atcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaagga 113  Q
    ||||||||| |||||||||||||||||||| || || |||||||| | ||| ||||| || |  || ||||| || || ||||  |||||||| ||||||    
T  1941324 atcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaagga 1941423  T
Q  114 agag 117  Q
    ||||    
T  1941424 agag 1941427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 955498 - 955440
Alignment:
Q  160 cctcctctcaatggagattattgcttcggtcagtaatggagaagaaacggcgtcgtcgt 218  Q
    |||||||| | |||||||| || ||| |||| | |||||||||||||||||||||||||    
T  955498 cctcctcttagtggagattgtttctttggtcgggaatggagaagaaacggcgtcgtcgt 955440  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 19727221 - 19727118
Alignment:
Q  14 atcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaagga 113  Q
    ||||| ||||||||||||| |||||||||| ||||||||||| |||| |||||  || || | |||||||| ||||||||||||||||||||||||||||    
T  19727221 atcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaatgagatcgaaagga 19727122  T
Q  114 agag 117  Q
    ||||    
T  19727121 agag 19727118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 31145142 - 31145255
Alignment:
Q  3 gcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatga 102  Q
    |||||||| | |||||  || ||||||||||| |||||||| |||||  ||||||| |||||||  || || |  || ||||| || || |||| |||||    
T  31145142 gcaaatttgggatcagatataagagaattccatgacttgcaaacacactggaattgtatgaggaatttcacagggagtctacagaggatatctgtaatga 31145241  T
Q  103 gatcgaaaggaaga 116  Q
    ||||||||||||||    
T  31145242 gatcgaaaggaaga 31145255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 23765012 - 23765105
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  |||||| | ||||||||||||||||||||||||||||    
T  23765012 attagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacagggagcctatagagaatttctggaatgagatcgaaaggaa 23765105  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 23814860 - 23814953
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  |||||| | ||||||||||||||||||||||||||||    
T  23814860 attagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacagggagcctatagagaatttctggaatgagatcgaaaggaa 23814953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 23774825 - 23774918
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23774825 attagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23774918  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 23861778 - 23861871
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23861778 attagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23861871  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 23754791 - 23754884
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23754791 attagagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23754884  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 23820246 - 23820339
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23820246 attagagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23820339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 23691256 - 23691163
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 114  Q
    |||||||||||||||  ||||||||||||||| |||||||||||| | || ||||  |||||    ||||||| ||||||||||||| ||||||    
T  23691256 attagagaattccacagcttgcacacacatcgaaattgcatgaggggtttcaccggaagcctgtggagaatttatggaatgagatcgcaaggaa 23691163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 11081476 - 11081380
Alignment:
Q  21 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 117  Q
    |||| |||||| ||||||||||| |||||| ||||| | | || || ||| |||| || ||||||||| |||||| ||||||||||| |||||||||    
T  11081476 attaaagaatttcacgacttgcaaacacattggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagag 11081380  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 20020529 - 20020640
Alignment:
Q  5 aaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgaga 104  Q
    |||||||| || || ||| ||||||||||| || || || |||||||| | ||| | ||||||||| || | || |||||| |||||||||  ||||||     
T  20020529 aaatttaggatgagagatgagagaattccatgaattacatacacatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgagg 20020628  T
Q  105 tcgaaaggaaga 116  Q
    ||||||||||||    
T  20020629 tcgaaaggaaga 20020640  T

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