View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384_low_8 (Length: 342)
Name: NF5384_low_8
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_low_8 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 34800061 - 34800387
Alignment:
| Q |
7 |
ggacatcatcaccattcataaaaccggtaccttcaaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaa |
106 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800061 |
ggacaccaacaccattcataaaaccggtaccttcaaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaa |
34800160 |
T |
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| Q |
107 |
gtaacattattaaagatacgatcatttcgcaccctccaaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatttgaca |
206 |
Q |
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| T |
34800161 |
gtaacattattaaagatacgatcatttcgcaccctccaaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatttgaca |
34800260 |
T |
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| Q |
207 |
ctgccccattccaacactcccagtgaacgatgagacaaagttgattcagcaacgagatgtgaagtggagaggcccaacgtgtgcatacattttccaccca |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34800261 |
ctgccccattccatcactcccagtgaacgatgagacaaagttgattcagcaacgagatgtgaagtggagaagcccaacgtgtgcatacattttccaccca |
34800360 |
T |
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| Q |
307 |
ttggggaaggagttgacgccatcacat |
333 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34800361 |
ttggggaaggagttgacgccatcacat |
34800387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 11889043 - 11888863
Alignment:
| Q |
32 |
ggtaccttcaaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcat |
131 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||| | | ||| ||||| || | ||||| |
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| T |
11889043 |
ggtaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccacta--tcc------ccacaaattaaattgttaaaaatgc-atcat |
11888953 |
T |
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| Q |
132 |
ttcgcaccctccaaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatttgacactgccccattccaac |
221 |
Q |
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| T |
11888952 |
ttctcgccctccaaatactccaaaccgcgggatgccaaatcaaccggtaccacttacgaaccttcttatttgtcttggccccattccaac |
11888863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 1611691 - 1611490
Alignment:
| Q |
38 |
ttcaaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgca |
137 |
Q |
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||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| || |||||| | ||||||||||| || |||||||| | || |
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| T |
1611691 |
ttcaaacgactcaacatgcacctccacaacaaaaccttaatcgcctccactaactccgccgccccacaaattacattattaaaaatgcgatcattcctca |
1611592 |
T |
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| Q |
138 |
ccctccaaatactccac----accgcggcatgccaaatcaactgataccctttacgaaccttcttatttgacactgccccattccaacactcccagtgaa |
233 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||| |
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| T |
1611591 |
ccctccaaatactccaattaaaccgcggcatggcaaatcaattgataccctttacgaaccttcttatttgtcactgctccgttccaacactccccgtgaa |
1611492 |
T |
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| Q |
234 |
cg |
235 |
Q |
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|| |
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| T |
1611491 |
cg |
1611490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 13725996 - 13725836
Alignment:
| Q |
41 |
aaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgcaccc |
140 |
Q |
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||||||||||| |||| |||||| ||||||||||| |||||||||| ||| ||| | ||||| || |||||| || || |||||||||| | ||| |
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| T |
13725996 |
aaacgactcaaagtccacctccacggaaaaaccttaattgcctccactatctcagcaacatcacaattagaattattgaaaattcgatcatttctcgccc |
13725897 |
T |
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| Q |
141 |
tccaaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatt |
201 |
Q |
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|||| | |||||| |||||||| |||||||||||| || | ||| |||||| ||| ||||| |
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| T |
13725896 |
tccataaactccaaaccgcggcgtgccaaatcaaccgaaaacctctacgaatcttattatt |
13725836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 201
Target Start/End: Complemental strand, 5038109 - 5037951
Alignment:
| Q |
43 |
acgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgcaccctc |
142 |
Q |
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||||||||||| |||||||||| | |||||||||||||||||||| |||||| | |||||| ||||||||| |||||| ||| || |||| |
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| T |
5038109 |
acgactcaacacccatctccacgataaaaccttaatcgcctccaccgtctccgccaccccacaaactgtattattaaaaatacgacgggttctcagcctc |
5038010 |
T |
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| Q |
143 |
caaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatt |
201 |
Q |
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| T |
5038009 |
caaatattccaaaccttggcatgccaaatcaaccagtaacctttacgaatcttcttatt |
5037951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 26728855 - 26728809
Alignment:
| Q |
128 |
tcatttcgcaccctccaaatactccacaccgcggcatgccaaatcaa |
174 |
Q |
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||||||| | ||||||| |||||||||||| |||||||||||||||| |
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| T |
26728855 |
tcatttctcgccctccatatactccacaccacggcatgccaaatcaa |
26728809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 38 - 234
Target Start/End: Complemental strand, 15858588 - 15858392
Alignment:
| Q |
38 |
ttcaaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgca |
137 |
Q |
| |
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|||||||| || ||||||||||||||| ||| |||||| |||||||||||||||||| | || ||||| | ||| ||||| ||||| || |||| || |
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| T |
15858588 |
ttcaaacggcttaacatccatctccacgacagaaccttgatcgcctccactaactccaccacttcacaatttacaccgttaaaaatacggtcgtttctca |
15858489 |
T |
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| Q |
138 |
ccctccaaatactccacaccgcggcatgccaaatcaa-ctgataccctttacgaaccttcttatttgacactgccccattccaacactcccagtgaac |
234 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |||| |||| || || ||||||||||||||| | |||||| ||||||||||||| ||||| |
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| T |
15858488 |
ccctccaaatactccaaaccgcagcatgccaaatcaacctga-acccgtttcggaccttcttatttgactccgccccactccaacactcccaatgaac |
15858392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 2621 - 2432
Alignment:
| Q |
44 |
cgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgcaccctcc |
143 |
Q |
| |
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|||||||||| |||||||||| | ||||||||||||||||| || | |||| | | |||||| | ||| ||||||| |||||||||| |||||||| |
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| T |
2621 |
cgactcaacacccatctccacgataaaaccttaatcgcctctaccacctccactaccccacaaattgtatttgtaaagatgcgatcatttctcaccctcc |
2522 |
T |
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| Q |
144 |
aaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatttgacactgccccattccaacactcccagtgaa |
233 |
Q |
| |
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|||||||||| |||||||| |||||||||||| || |||||||||| |||||| ||||| | ||||| ||||||||||||| |||| |
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| T |
2521 |
aaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatcttcttctttgattcacccccactccaacactcccaatgaa |
2432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 10909433 - 10909593
Alignment:
| Q |
41 |
aaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcgcaccc |
140 |
Q |
| |
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||||||||||| |||| |||||| ||||||||||||||||||||| || ||| ||| | ||||| || |||||| || || |||||||||| ||||| |
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| T |
10909433 |
aaacgactcaaagtccacctccacgacaaaaccttaatcgcctccaatatctcagcaacatcacaattagaattattgaaaattcgatcatttctcaccc |
10909532 |
T |
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| Q |
141 |
tccaaatactccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatt |
201 |
Q |
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|||| | |||||| |||||||| |||||||||||| || | ||| |||||| ||| ||||| |
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| T |
10909533 |
tccataaactccaaaccgcggcgtgccaaatcaaccgaaaacctctacgaatcttattatt |
10909593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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