View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5384_low_9 (Length: 338)
Name: NF5384_low_9
Description: NF5384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5384_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 33896526 - 33896859
Alignment:
| Q |
1 |
agcagcacagacaagcaatctcttacaacccaacttccccaaatccggatcattagctgggttaatcaacgggtcatccgatccagtcgtagttggacat |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33896526 |
agcaacacaaacaagcaatctcttacaacccaacttccccaaatccggatcattagctgggttaatcaacgggtcatccgatccagtcgtagttggacat |
33896625 |
T |
|
| Q |
101 |
gaaaaacgccacaaattatgaatcttttctacaaattcagccatatttgattcagaaccaattagatccacaccccaaaaataaggatgtatataaacac |
200 |
Q |
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| T |
33896626 |
gaaaaacgccacaaattatgaatcttttctacaaattcagccatatttgattcagaaccaattagatccacaccccaaaaataaggatgtatataaacac |
33896725 |
T |
|
| Q |
201 |
tcccttcaagtttcacaccatctaaattttccttcccaacccgaatacccaaatagtgtgaaatattagcaccagcactatcacctcctaagaacacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33896726 |
tcccttcaagtttcacaccatctaaattttccttcccaacccgaatacccaaatagtgtgaaatattagcaccagcactatcacctcctaagaacacttt |
33896825 |
T |
|
| Q |
301 |
ctcaaaatctgcatattgattcaaccattcatca |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
33896826 |
ctcaaaatctgcatattgattcaaccattcatca |
33896859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 33902313 - 33901992
Alignment:
| Q |
13 |
aagcaatctcttacaacccaacttccccaaatccggatcattagctgggttaatcaacgggtcatccgatccagtcgtagttggacatgaaaaacgccac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
33902313 |
aagcaatctcttacaacccaacttccccaaatccggatcattagccgggttaatcaacgggtcatccgatccattcgtagttggacatgcaaaacgccat |
33902214 |
T |
|
| Q |
113 |
aaattatgaatcttttctacaaattcagccatatttga-ttcagaaccaattagatccacaccccaaaaataaggatgtatataaacactcccttcaagt |
211 |
Q |
| |
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||||||||||||||||| | | ||||||| | ||| | ||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
33902213 |
aaattatgaatcttttcaatatattcagct-tgtttcagttctgatccaatccgatccacaccccaaaaataaggatgaatataaaaactcccttcaagt |
33902115 |
T |
|
| Q |
212 |
ttcacaccatctaaattttccttcccaacccgaatacccaaatagtgtgaaatattagcaccagcactatcacctcctaagaacactttctcaaaatctg |
311 |
Q |
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|| |||||||| |||||||||||||| |||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
33902114 |
tttacaccatccaaattttccttcccgacccgaatacttaaatggtgtgcaatattagccccagcactatcacctcctaagaaaactttctcaaaatctg |
33902015 |
T |
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| Q |
312 |
catattgattcaaccattcatca |
334 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33902014 |
catattgattcaaccattcatca |
33901992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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