View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5385-Insertion-5 (Length: 518)
Name: NF5385-Insertion-5
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5385-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 25 - 518
Target Start/End: Original strand, 1138913 - 1139407
Alignment:
| Q |
25 |
ctctcactatcgctcttttctcttcaaagtaaaaaagaaaacatcaaattcctat--atttgcagttaccatcaccatggagaacaatacctatcatcga |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
1138913 |
ctctcactatcgctcttttctcttcaaagtaaaaaagaaaacatcaaattcctatcgatttgcaattaccatcaccatggagaacaataccgatcatcga |
1139012 |
T |
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| Q |
123 |
aacataacctcatcatatcttaattttttcaaagctcaactccatctactaaacttctttacttatgccctaatctttggttttggtttactcatcggta |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1139013 |
aacataacctcatcatatcttaattttttcaaagctcaactccatctactaaacttctttactta-gccctaatctttggttttggtttactcatcggta |
1139111 |
T |
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| Q |
223 |
tcacactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaagatccatcctttagcctcaatccaccacctgatttttcaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1139112 |
tcacactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaagatccatcctttagcctcaatccaccacctgatttttcaca |
1139211 |
T |
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| Q |
323 |
ttattctccaatactattatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcat |
422 |
Q |
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| T |
1139212 |
ttctcctccaatactactatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcat |
1139311 |
T |
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| Q |
423 |
aaccttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggct |
518 |
Q |
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| T |
1139312 |
aaccttacttcaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggct |
1139407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 32 - 518
Target Start/End: Original strand, 1135706 - 1136196
Alignment:
| Q |
32 |
tatcgctcttttctcttcaaagtaaaaaagaaaacatcaa-----attcctat--atttgcagttaccatcaccatggagaacaatacctatcatcgaaa |
124 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||| |||| ||| ||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
1135706 |
tatctctcttttctcttcaaagtaaaaaagaaaacaccaacacaaattcttatcgatttgttgttaccatcaccatggagaacaataccgatcaacgaag |
1135805 |
T |
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| Q |
125 |
cataacctcatcatatcttaattttttcaaagctcaactccatctactaaacttctttacttatgccctaatctttggttttggtttactcatcggtatc |
224 |
Q |
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| T |
1135806 |
catagcttcatcgtattttaattttttcaaagctcaactccatctactaaacttctttacttatgccctaatctttagttttggtttactcattggtatg |
1135905 |
T |
|
| Q |
225 |
acactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaagatccatcctttagcctcaatccaccacctgatttttcacatt |
324 |
Q |
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| T |
1135906 |
acactcactttttgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatccttaagcctcaatccaccacctcatttttcatatt |
1136005 |
T |
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| Q |
325 |
attctccaatactattatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataa |
424 |
Q |
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| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
1136006 |
ctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatttctatcaaacaaaattgtccggc---tactcataa |
1136102 |
T |
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| Q |
425 |
ccttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggct |
518 |
Q |
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| T |
1136103 |
ccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattattttggagagcttcattggct |
1136196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 86 - 516
Target Start/End: Complemental strand, 54479756 - 54479332
Alignment:
| Q |
86 |
agttaccatcaccatggagaacaatacctatcatcgaaacataacctcatcat---atcttaattttttcaaagctcaactccatctactaaacttcttt |
182 |
Q |
| |
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|||| |||||||||||||||||||||| || | | ||||||||||||||||| |||| ||| ||||| | ||||| | ||||||| || ||| || |
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| T |
54479756 |
agttgccatcaccatggagaacaatacggataaacaaaacataacctcatcatcatatctaaatattttcggtgttcaacgctatctactcaatttcatt |
54479657 |
T |
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| Q |
183 |
acttatgccctaatctttggttttggtttactcatcggtatcacactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaag |
282 |
Q |
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||| || | ||||||||| |||||||||||| || |||||||||||||| ||||| ||| || ||||||||||| |||||||||| |||| ||||| |
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| T |
54479656 |
actcatattttggtctttggttgtggtttactcattggcatcacactcactttgtgtgtcaaaaatatttcattcaactttcaaatccaaaaatcccaag |
54479557 |
T |
|
| Q |
283 |
atccatcctttagcctcaatccaccacctgatttttcacattattctccaatactattatccaacatctcaaaaacatcatatgaccaaaataaccaaac |
382 |
Q |
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| T |
54479556 |
atccatcctttagcttcaatccaccacctcgtgtttctcattctcctccaatattatcatacaacatttcaaa---------tgagcattataaccaaac |
54479466 |
T |
|
| Q |
383 |
caatatttctatcaaacaaaattgttcggctattactcataaccttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatg |
482 |
Q |
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||||||||||||||| || |||| | || | ||||| |||||||||||| | |||| ||| |||| || || |||||||||| |||||||||||||||| |
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| T |
54479465 |
aaatatttctatcaaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctatgcatgacatg |
54479366 |
T |
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| Q |
483 |
aatgaggatgaattattttggagagcttcattgg |
516 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
54479365 |
aatgaggatgaattgttttggagagcttcattgg |
54479332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 511
Target Start/End: Complemental strand, 31269290 - 31269206
Alignment:
| Q |
427 |
ttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttc |
511 |
Q |
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|||||| |||||| ||||| ||||| || |||||||| | |||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttc |
31269206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 31269501 - 31269394
Alignment:
| Q |
198 |
tttggttttggtttactcatcggtatcacactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaagatccatcctttagcc |
297 |
Q |
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|||||| ||||||||||||| |||||||| |||||||||||| | ||| || |||||||||| ||||| |||| |||| ||||||||| | |||||| |
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| T |
31269501 |
tttggtcttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaattttcaattccaacaatttcaagatccaccttttagct |
31269402 |
T |
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| Q |
298 |
tcaatcca |
305 |
Q |
| |
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|||||||| |
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| T |
31269401 |
tcaatcca |
31269394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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