View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5385-Insertion-7 (Length: 325)

Name: NF5385-Insertion-7
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5385-Insertion-7
NF5385-Insertion-7
[»] chr4 (3 HSPs)
chr4 (232-323)||(52380231-52380322)
chr4 (5-81)||(52380455-52380531)
chr4 (105-141)||(52380399-52380435)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 232 - 323
Target Start/End: Complemental strand, 52380322 - 52380231
Alignment:
Q  232 gagaagactgccctacttaatgggccgggcttgtcattttcactaatgggtacccggtactttttatcaaattaataggctattacttttcc 323  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52380322 gagaagactgcactacttaatgggccgggcttgtcattttcactaatgggtacccggtactttttatcaaattaatagactattacttttcc 52380231  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 52380531 - 52380455
Alignment:
Q  5 acaagaatgaagtgtgaagaaggaaaatggaatgaaaatgattatgttgatgcatgtcagaagtgaagaagtgttat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52380531 acaagaatgaagtgtgaagaaggaaaatggaatgaaaatgattatgttgatgcatgtcagaagtgaagaagtgttat 52380455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 52380435 - 52380399
Alignment:
Q  105 agggtttatgattctacggggggtttgatttccctcc 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  52380435 agggtttatgattctacggggggtttgatttccctcc 52380399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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