View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5385_high_6 (Length: 373)
Name: NF5385_high_6
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5385_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 43909055 - 43908712
Alignment:
| Q |
19 |
actaaggaagtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaacaggtgaac |
118 |
Q |
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| T |
43909055 |
actaaggaagtagctctatcatttgcttgtaatgtatccatcctacttgattctctttgaggaagagattttcttctccaagttttagcaacaggtgaac |
43908956 |
T |
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| Q |
119 |
ttgatttttcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttcttaacgtatcgcattaaaagtccatc |
218 |
Q |
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| T |
43908955 |
ttgatttttcataccttctattttgatcctttacatgttcttttcccatgccaggttcattaggagtttgtttgttaacgtatcgcattaaaagtccatc |
43908856 |
T |
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| Q |
219 |
taatatcatttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctcactgatctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908855 |
taatatcatttcttcatccaatgcaccacctgtttcagaaaaatctttaactgtgttttcaacaggtggtggttttagaggtctccttctcactgatctt |
43908756 |
T |
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| Q |
319 |
ggtttcggcttttcagcaggtagagcttcaactgttttcttcat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908755 |
ggtttcggcttttcagcaggtagagcttcaactgttttcttcat |
43908712 |
T |
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