View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5385_low_11 (Length: 267)
Name: NF5385_low_11
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5385_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 52380524 - 52380779
Alignment:
| Q |
18 |
attcttgtatcaattttcttcattttcattctctgtgtaatcaacacctaaggagtaacctttgaacacgcatagttactaaacttctatggcgagtttg |
117 |
Q |
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| T |
52380524 |
attcttgtatcaattttcttcattttcattctctgtgtaatcaacacctaaggagtaacctttgaacccgcatagttactaaacttctatggcgagtttg |
52380623 |
T |
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| Q |
118 |
cttcgtaccaattccttactcacacgctctctattcgccgctcaggtacactttcgtcccctactgattttgttt------ttgcacagtgatcacgatc |
211 |
Q |
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| T |
52380624 |
cttcgtaccaattccttactcacacgctctctattcgccgctcaggtacgctttcttcccctactgattttgtttttgcagttgcacagtgatcacgatc |
52380723 |
T |
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| Q |
212 |
atactaatttatttttctgtgtgtgcagggtattaaactaggactatcttccactt |
267 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52380724 |
atactaatttatctttctgtgtgtgcagggtgttaaactaggactatcttccactt |
52380779 |
T |
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