View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5385_low_2 (Length: 466)
Name: NF5385_low_2
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5385_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 56468712 - 56469152
Alignment:
| Q |
15 |
caatatatgctcggacatgaagtcgtgccttgtcaagattcccacaattggaggtctctgcataacaaccacaaatattagtaattgttagttaatactc |
114 |
Q |
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| T |
56468712 |
caatatatgctcggacatgaagtcgtgccttgtcaagatccccacaattggaggtctctgcataacaaccacaaatattagtaattgttagttaatactc |
56468811 |
T |
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| Q |
115 |
actcccagccaacaaacaaggataattgtaattaatgattgcaaagtcagccaatgtatacttaaatacatggatatgtttattcaagattgtaatagta |
214 |
Q |
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| T |
56468812 |
actcccagccaacatacaaggataattgtaattaatgattgcaaagtcagccaatgtatacttaaatgcatggatatgtttattcaagattgtaatagta |
56468911 |
T |
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| Q |
215 |
tattgtttcttactccggatgtctttggcaccaccaacaaatgcctgaggccaagctcacggaaaagaactgcagttttagctagagacattgtttccac |
314 |
Q |
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| T |
56468912 |
tattgtttcttactccggatgtctttggcaccaccaacaaatgcctgaggccaagctcacggaaaagaactgcagttttagctagagacattgtttccac |
56469011 |
T |
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| Q |
315 |
aactgtatacgatgacttgtttgtaatatgatgcatatcaacatacatttccatctcttcctctgatatctttaaatcatccagtcttatccctttcccc |
414 |
Q |
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| T |
56469012 |
aactgtatacgatgacttgttggtaatatgatgcatatcaacatacatttccatctcttcctctgatatctttaaatcatccagtcttatccctttcccc |
56469111 |
T |
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| Q |
415 |
gaacctggctttccaaagtcatgtgccctcagcttgttcat |
455 |
Q |
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| T |
56469112 |
gaacccggctttccaaagtcatgtgccctcagcttgttcat |
56469152 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 371
Target Start/End: Complemental strand, 155640 - 155492
Alignment:
| Q |
223 |
cttactccggatgtctttggcaccaccaacaaatgcctgaggccaagctcacggaaaagaactgcagttttagctagagacattgtttccacaactgtat |
322 |
Q |
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| T |
155640 |
cttactcctggtttcttaggcacaactagcaaatgcctgagtccaagctcccgaaacagaagagcagcttttgcaagagacattgtttcaacaacagtat |
155541 |
T |
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| Q |
323 |
acgatgacttgtttgtaatatgatgcatatcaacatacatttccatctc |
371 |
Q |
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| T |
155540 |
atggagaagtatttgtgattggatgaagatcaacatacatttccatctc |
155492 |
T |
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