View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5385_low_5 (Length: 381)
Name: NF5385_low_5
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5385_low_5 |
 | |
|
| [»] scaffold1191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 34174495 - 34174634
Alignment:
| Q |
1 |
agagcagcacctaacatataaatacattatccctatctagcatttcgtcttatctccattataataattcatttcaagagtctcatatcttcttatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34174495 |
agagcagcacctaacatataaatacattatccctatctagcatttcttcttatctccattataataattcatttcaagagtctcatatcttcttatgaac |
34174594 |
T |
|
| Q |
101 |
aaggtcatatgaaatatgaacacattctaaaaatagaaaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34174595 |
aaggtcatatgaaatatgaacacattctaaaaatagaaaa |
34174634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 200 - 363
Target Start/End: Original strand, 34174693 - 34174853
Alignment:
| Q |
200 |
gtgacatttagttgtgtgatcagtttcaaagtcccggaatgaatcattttctttaggaaatctttaatcgtggagttgttggaggatagggttgaattct |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34174693 |
gtgacatttagttgtgtgatcagtttgaaagtcccggaatgaatcattttctttaggaaatctttaatcgtcgagttgttggaggatagggttgaattct |
34174792 |
T |
|
| Q |
300 |
ccatgtggaaatgnnnnnnngtacgacactggttatccatgttcctacaatgagtaggtaacag |
363 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34174793 |
ccatgtggaaatgtttttttgtacgacactggttatccatgttcct---atgagtaggtaacag |
34174853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1191 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1191
Description:
Target: scaffold1191; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 94
Target Start/End: Complemental strand, 498 - 467
Alignment:
| Q |
63 |
aataattcatttcaagagtctcatatcttctt |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
498 |
aataattcatttcaagagtctcatatcttctt |
467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University