View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5385_low_7 (Length: 368)
Name: NF5385_low_7
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5385_low_7 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 55956107 - 55956445
Alignment:
| Q |
11 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956107 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
55956206 |
T |
|
| Q |
111 |
aatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaacaata |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956207 |
aatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaacaata |
55956306 |
T |
|
| Q |
211 |
tctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaaatcaggag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956307 |
tctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaaatcaggag |
55956406 |
T |
|
| Q |
311 |
atgaaacaaccactgcagaaatttcaccaagctgaagat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55956407 |
atgaaacaaccactgcagaaatttcaccaagctgaagat |
55956445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 55959551 - 55959894
Alignment:
| Q |
11 |
caaaggtacttaccaaagaaaaagctgttttagtaacattaagtggtagtgaaagtgaaacttgaattgattgtatgagcttttgcacctcttcttctct |
110 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||| ||||| |||||||| |
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| T |
55959551 |
caaaggtacttaccaaagagaaagctattttagtaacatcaagtggtagtgaaagtgaaccttgaatggattgtataagcttttctacctcatcttctct |
55959650 |
T |
|
| Q |
111 |
aatggaagaaaaataatgaacccttttagcactaa-----gaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcataaa |
205 |
Q |
| |
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||||||||||||| | ||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| | | |
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|
| T |
55959651 |
aatggaagaaaaagattgaacccttttagcactaatataagaagttctgatgtacatattttcctcatttgtctccaataatcaccgtatggagcaaaga |
55959750 |
T |
|
| Q |
206 |
caatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaaatc |
305 |
Q |
| |
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||||| | ||||||||||| | |||||| |||||||| | ||||| |||||| |||||||||| ||||||| ||||||||| |||||||||||| ||||| |
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|
| T |
55959751 |
caataccagttgaatcataggctaatatattaggagcaatgagttttggcctttgaacaaaagcaagatcacgtgtcttcaatatctctttggctaaatc |
55959850 |
T |
|
| Q |
306 |
aggagatgaaacaaccactgcagaaatttcaccaagctgaagat |
349 |
Q |
| |
|
||| ||||| ||||| | || |||||||||||| |||||||||| |
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|
| T |
55959851 |
aggggatgagacaactattgtagaaatttcacctagctgaagat |
55959894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 80 - 349
Target Start/End: Original strand, 12426506 - 12426775
Alignment:
| Q |
80 |
attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtct |
179 |
Q |
| |
|
||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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|
| T |
12426506 |
attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtct |
12426605 |
T |
|
| Q |
180 |
ccaataatcaccgtatggagcataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgt |
279 |
Q |
| |
|
|||||||||||| |||| |||| | | ||||||| |||| ||||||| |||||| || |||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
12426606 |
ccaataatcaccatatgaagcaaagataatatcttttgattcatatgttaatatatttggagctaggaattgtggcctctgaacaaaagaaagatcatgt |
12426705 |
T |
|
| Q |
280 |
gtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaatttcaccaagctgaagat |
349 |
Q |
| |
|
||||||||||||||||| | ||||| ||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
12426706 |
gtcttcattatctctttagtcaaattaggggatgaaacaaccactgtagaaatttcaccaagctgaagat |
12426775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 12266314 - 12266045
Alignment:
| Q |
80 |
attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtct |
179 |
Q |
| |
|
||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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|
| T |
12266314 |
attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgtacatatttttctcatctgtct |
12266215 |
T |
|
| Q |
180 |
ccaataatcaccgtatggag-cataaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatg |
278 |
Q |
| |
|
|||||||||||| |||| || ||| | ||||||| |||| ||||| | || ||| || ||||| |||| | |||||||| ||| |||||||||||||| |
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|
| T |
12266214 |
ccaataatcaccatatgaagacat-gagaatatcttttgattcataggttattatattcggagcaaggaatcgtggcctctcaacgaaagaaagatcatg |
12266116 |
T |
|
| Q |
279 |
tgtcttcattatctctttggccaaatcaggagatgaaacaaccactgcagaaatttcaccaagctgaagat |
349 |
Q |
| |
|
|||| ||||||| ||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
12266115 |
tgtcctcattatttctttggtcaaattaggggatgaaacaaccacggcagaaatttcaccaagctgaagat |
12266045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 338
Target Start/End: Complemental strand, 7140753 - 7140518
Alignment:
| Q |
103 |
tcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcat |
202 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||| |||| || | | ||||||||| ||||| ||||||||||||||||| ||||||| | |
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|
| T |
7140753 |
tcttctctaatgtaagaaaaagattgaacccttttagcacttagaatctctaagacacatatttttctcatttgtctccaataatcaccatatggagaaa |
7140654 |
T |
|
| Q |
203 |
aaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaa |
302 |
Q |
| |
|
| ||||||||| | || |||| | ||| |||||| ||| | |||| |||||| | | ||||| || ||||||||| ||||||| || ||||| || |
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|
| T |
7140653 |
atacaatatctttaaaaccataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcattacttccttggctaa |
7140554 |
T |
|
| Q |
303 |
atcaggagatgaaacaaccactgcagaaatttcacc |
338 |
Q |
| |
|
|| | || ||||||||||||||| ||||||||| |
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|
| T |
7140553 |
atttgaggaagaaacaaccactgcattaatttcacc |
7140518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 341
Target Start/End: Complemental strand, 7152584 - 7152346
Alignment:
| Q |
103 |
tcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgtacatattttcctcatctgtctccaataatcaccgtatggagcat |
202 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||| ||||| | | ||||||||| ||||| ||||||||| ||||||| ||||||| | |
|
|
| T |
7152584 |
tcttctctaatataagaaaaagattgaacccttttagcacttagaagttcaaagacacatatttttctcatttgtctccaaaaatcaccatatggagaaa |
7152485 |
T |
|
| Q |
203 |
aaacaatatctgttgaatcatatgataatattttaggagctaggagttctggcctctgaacaaaagaaagatcatgtgtcttcattatctctttggccaa |
302 |
Q |
| |
|
| ||||||||| ||||| |||| | | |||| ||| | || |||| |||||| | | |||||| | ||||||||| |||||||| || || ||||| |
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|
| T |
7152484 |
atacaatatcttttgaaccataggccataatttcaggggaaagaagttttggcctattagcaaaagcagcatcatgtgttttcattatttcctttgccaa |
7152385 |
T |
|
| Q |
303 |
atcaggagatgaaacaaccactgcagaaatttcaccaag |
341 |
Q |
| |
|
| ||||||||| |||| ||| | ||||||||||||||| |
|
|
| T |
7152384 |
tttaggagatgatacaatcacagtagaaatttcaccaag |
7152346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 7130335 - 7130269
Alignment:
| Q |
158 |
tacatattttcctcatctgtctccaataatcaccgtatggagcataaacaatatctgttgaatcata |
224 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||| | | |||||||| ||||| |||| |
|
|
| T |
7130335 |
tacatatttttctcatttgtctccaataatcaccatatggagaaaatgcaatatcttttgaaccata |
7130269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 22858457 - 22858506
Alignment:
| Q |
271 |
agatcatgtgtcttcattatctctttggccaaatcaggagatgaaacaac |
320 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
22858457 |
agatcatgtgttttcattatctcttttgccatatcttgagatgaaacaac |
22858506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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