View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5385_low_9 (Length: 293)
Name: NF5385_low_9
Description: NF5385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5385_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 23695091 - 23694826
Alignment:
| Q |
12 |
tcatcaggaggcagagtgtggatcagaagactgacatctgtgttggctcctagtttagcaaaataaccggcgcatttattgccctcgcagagagtgtggt |
111 |
Q |
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| T |
23695091 |
tcatcaggaggcagagtctggatcagaaaactgacatctgtgctggctcttagtttagcaaaataatcggcgcacttatttccctcgcagagagtgtggt |
23694992 |
T |
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| Q |
112 |
tgagagaataattcaccgtggaaagcaagtctatgatgtcttgaataaggacaacatgaacatggaacttggagaagctgccagaaataagatcaataga |
211 |
Q |
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| T |
23694991 |
tgagagaataattcaatgtgtaaagcaagtctatgatgtctttaataaggacaaaatgaacgtcgaacttggagaagctgcatgaaataaaatcaataga |
23694892 |
T |
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| Q |
212 |
aaggagagaatccgagtaaacaaccatatctgtgatgcccatatccttagcaatggagatgccatg |
277 |
Q |
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| T |
23694891 |
aaggagagagtccgagtaaacagccatatctgtgatgcccatatccttaggaatggtgattccatg |
23694826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 23690094 - 23690054
Alignment:
| Q |
12 |
tcatcaggaggcagagtgtggatcagaagactgacatctgt |
52 |
Q |
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| T |
23690094 |
tcattaggaggcagagtgtggatcagaagactgacatctgt |
23690054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 30071893 - 30071797
Alignment:
| Q |
11 |
atcatcaggaggcagagtgtggatcagaagactgacatctgtgttggctcctagtttagcaaaataaccggcgcatttattgccctcgcagagagtg |
107 |
Q |
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| T |
30071893 |
atcatcgggaggcagagtttgaatcaaaagaccatcatctgagctggctcctagttttgcaaaataatcggcgcactgattaccctcacggagagtg |
30071797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 179500 - 179448
Alignment:
| Q |
201 |
agatcaatagaaaggagagaatccgagtaaacaaccatatctgtgatgcccat |
253 |
Q |
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| T |
179500 |
agattaattgaaaggagagaatctgaataaaccgccatatctgtgatgcccat |
179448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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