View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5386_high_1 (Length: 312)
Name: NF5386_high_1
Description: NF5386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5386_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 38483908 - 38483629
Alignment:
| Q |
14 |
catcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactccta |
113 |
Q |
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| T |
38483908 |
catcaccgcacgccaaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactccta |
38483809 |
T |
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| Q |
114 |
aacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttct |
213 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38483808 |
aacaaattccaaaacgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttct |
38483709 |
T |
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| Q |
214 |
caaaacacctcttactccaaaaatactcatttatatcatcataatttctccatctcgtatgtggttccgttccattacca |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38483708 |
caaaacacctcttactccaaaaatactcatttatatcatcataatttctccatcttgtatgtggttccgttccattacca |
38483629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 3682910 - 3682860
Alignment:
| Q |
216 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccat |
266 |
Q |
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| T |
3682910 |
aaacacctcctactccaaaaatactcatttatatcatcataattcctccat |
3682860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 265
Target Start/End: Complemental strand, 30118257 - 30118047
Alignment:
| Q |
67 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatt |
166 |
Q |
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||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| | || |
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| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaacatgttt |
30118158 |
T |
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| Q |
167 |
tccatcg------------aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatca |
254 |
Q |
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|| | |||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30118157 |
ccccttaccaacagtagtaaaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatactcattaatatcatca |
30118058 |
T |
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| Q |
255 |
taatttctcca |
265 |
Q |
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||||||||||| |
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| T |
30118057 |
taatttctcca |
30118047 |
T |
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