View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-10 (Length: 200)
Name: NF5387-Insertion-10
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-101
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 43713485 - 43713671
Alignment:
| Q |
8 |
tcctaaactcgcaggcatttcaacactgcaaactcttagactcacaaacacactaagaccaccgagccaataaatgccwcaaataaatatgcaatcccct |
107 |
Q |
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| T |
43713485 |
tcctaaactcgcaggcatttcaacactgcaaactcttagactcacaaacacactaagaccaccgagccaataaatgcctcaaataaatatgcaatcccct |
43713584 |
T |
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| Q |
108 |
tcatcacttacaaagaatgggtgcaatgacaaaagcatcaagaacataactgcaaaacaagaaccaagaatgtacgtccaaaagctt |
194 |
Q |
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| T |
43713585 |
tcatcacttacaaagaatgggtgcaatgacaaaagcatcaagaacataactgcaaaacaagaaccaagaatgtacgtccaaaagctt |
43713671 |
T |
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Target: chr1 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 52894290 - 52894106
Alignment:
| Q |
10 |
ctaaactcgcaggcatttcaacactgcaaactcttagactcacaaacacactaagaccaccgagcc-aataaatgccwcaaataaatatgcaatcccctt |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || | || ||| || ||| ||||| |||||||||| |||||||||||||| || ||| |
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| T |
52894290 |
ctaaactcgcaggcatttcaaaactgcaaactcttagacccatagaccaactttgatcactgagccaaataaatgcctgaaataaatatgcaaccctctt |
52894191 |
T |
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| Q |
109 |
catcacttacaaagaatgggtgcaatgacaaaagcatcaagaacataactgcaaaacaagaaccaagaatgtacgtccaaaagctt |
194 |
Q |
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|||| |||||| ||||||||||||| ||||||||| || ||||| |||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
52894190 |
catctcttacagagaatgggtgcaaggacaaaagc-tcgagaacttaacagcaaaacaagaaccaacaatgtacatccaaaagctt |
52894106 |
T |
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