View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-12 (Length: 364)
Name: NF5387-Insertion-12
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 56378143 - 56378501
Alignment:
| Q |
6 |
caagcagcagctgttagtactggtgtggaattagatcatgatcattcctcctacaagaaatcgtcaccagttgttgtgaggtacagagaatgcctaaaga |
105 |
Q |
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| T |
56378143 |
caagcagcagctgttagtactggtgtggaattagatcatgatcattcctcctacaagaaatcgtcatcagttgttgtgaggtacagagaatgcctaaaga |
56378242 |
T |
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| Q |
106 |
accatgcagctgcaatgggagggaatgctacagatggctgtggtgagttcatgcccagtggtgaacaaggaaccattgaagcactcaactgctctgcctg |
205 |
Q |
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| T |
56378243 |
accatgcagctgcaatgggagggaatgctacagatggctgtggtgagttcatgcccagtggtgaacaaggaaccattgaagcactcaactgctctgcctg |
56378342 |
T |
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| Q |
206 |
ccattgtcacagaaacttccacagaaaagaaatccaaggtgagactgaggatcaggagaactaccaccatcactcagccttcaatttcaacttcaacaga |
305 |
Q |
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| T |
56378343 |
ccattgtcacagaaacttccacagaaaagaagtccaaggtgagactgaggatcaggagaactaccaccatcactcagccttcaacttcaacttcaacaga |
56378442 |
T |
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| Q |
306 |
cagcagcaccaccacagcatgaggaaattcatgttacctcttcctgatcaggctcttgg |
364 |
Q |
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| T |
56378443 |
cagcagcaccaccacagcatgaggaaattcatgttacctcttcctgatcaggctcttgg |
56378501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 34371386 - 34371250
Alignment:
| Q |
102 |
aagaaccatgcagctgcaatgggagggaatgctacagatggctgtggtgagttcatgcccagtggtgaacaaggaaccattgaagcactcaactgctctg |
201 |
Q |
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| T |
34371386 |
aagaaccatgcagctacaattggtggcaatgcaattgatggatgtggtgaattcatgccaagtggagaaaatgacacacttgaagctctcaaatgttgtg |
34371287 |
T |
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| Q |
202 |
cctgccattgtcacagaaacttccacagaaaagaaat |
238 |
Q |
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| T |
34371286 |
cttgcaattgccatagaaacttccacagaaaagaaat |
34371250 |
T |
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