View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-15 (Length: 227)
Name: NF5387-Insertion-15
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 7422845 - 7422626
Alignment:
| Q |
8 |
atttttgggctcaccacacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttactccctctaagaatttttctttaata |
107 |
Q |
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| T |
7422845 |
atttttgggctgactactcctaggaaaataccactagaagttgttgtggagcctagacttcctcatcatctttactccctctaagaatttttctttaata |
7422746 |
T |
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| Q |
108 |
agattgggaataatgggatttgtgtgagttcaatgtcattaacttaatgacaagnnnnnnnncaagcatgactatgaataaaaaatattggttttcgaat |
207 |
Q |
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| T |
7422745 |
agattgggaataatgggatttgtgtgagttcaatgtcattaacttaatgacaagaaaaaaaacaagcatgactgtgaataaaaaatattggtgtttgaat |
7422646 |
T |
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| Q |
208 |
gttgaagttagtaacgagtc |
227 |
Q |
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| T |
7422645 |
gttgaagttagtaatgagtc |
7422626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 7429251 - 7429098
Alignment:
| Q |
8 |
atttttgggctcaccacacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttactccctctaagaatttttctttaata |
107 |
Q |
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|||||||||||||| ||||||| |||||||||| ||||||||||| | ||||||| |||||| |||||||||| | |||||||| |||||||| ||||| |
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| T |
7429251 |
atttttgggctcactacacctaagaaaataccattagaagttgttttggagcctaaacttccgtatcatctttattgcctctaagtatttttctctaata |
7429152 |
T |
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| Q |
108 |
agattgggaataatgggatttgtgtgagttcaatgtcattaacttaatgacaag |
161 |
Q |
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| T |
7429151 |
atattgggaataatgggatttttgtgagttcaatgttattaacttcatgacaag |
7429098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 7415186 - 7415107
Alignment:
| Q |
8 |
atttttgggctcaccacacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttactccct |
87 |
Q |
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||||||||||| | ||||||| |||||||||| ||||| ||||| | |||||||||||| || |||||||||||||||| |
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| T |
7415186 |
atttttgggctttctacacctaagaaaataccattagaaattgttgtggagcctagacttgctgatcatctttactccct |
7415107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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