View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-2 (Length: 1071)
Name: NF5387-Insertion-2
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 850; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 850; E-Value: 0
Query Start/End: Original strand, 8 - 1010
Target Start/End: Complemental strand, 30289464 - 30288447
Alignment:
| Q |
8 |
gatagcaccacttaaaactccatgcatttcatatgacatctttaaaacacnnnnnnntgattgcaagaaataagagaatcgtcatttaaggtaaggttat |
107 |
Q |
| |
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| T |
30289464 |
gatagcaccacttaaaactccatgcatttcatatgacatctttaaaacacaaaaaaatgatgacaagaaataagagaatcgtcatttaaggtaaggttgt |
30289365 |
T |
|
| Q |
108 |
ttgaaacttctaatcatttttgaacataggtgcttatggattactcaatcaagcatttacgtaatctcatcatacatgcatatcccttcatggaaattga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30289364 |
ttgaaacttctaatcatttttgaacataggtgcttatggattactcaatcaagcatttacgtaatctcatcatacatgcctatcccttcatggaaattga |
30289265 |
T |
|
| Q |
208 |
ttccctatggtaatacggcacacaattttaagtcttggtcatacgatgtaaaccagagaaggagattgtttatatttttaagccttaatatatggaatct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289264 |
ttccctatggtaatacggcacacaattttaagtcttggtcatacgatgtaaaccagagaaggagattgtttatatttttaagccttaatatatggaatct |
30289165 |
T |
|
| Q |
308 |
ttgcacttgaaatgtttaatatgtcatatggtattcctagtatcactaaaatacaatatttaattttgtaaactaattaagacatgtcaaaatatttctc |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289164 |
ttgcacttgaaatgtttaatatgtcatatggtattcccagtatcactaaaatacaatatttaattttgtaaactaattaagacatgtcaaaatatttctc |
30289065 |
T |
|
| Q |
408 |
cttttattgaaaaaaggaaatgataaaaagaatatgttatagtttcaacttacatggtgaaagatatagcaaagacattctggcatgaacctcaaattag |
507 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289064 |
cttttattgaaaaaaggaaatgatacaaagaatatgttatagtttcaacttacatggtgaaagatatagcaaagacattctggcatgaacctcaaattag |
30288965 |
T |
|
| Q |
508 |
cagcctccccccatatgagcaggtaaagaccaatgtacaaaattttatattgttgygcttcttgtttcacaaaaggtaagctgcagcacaagtaacagac |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30288964 |
cagcctccccccatatgagcaggtaaagaccaatgtacaaaattttatattgttgtgcttcttgtttcacaaaaggtaagctgcagcacaagtaacagac |
30288865 |
T |
|
| Q |
608 |
ttacatcagaaagcaggaaaaagaatcttcaaaccaaatacattatggtttacatgaaatgaataaaaaagaaaagttgaaggaatgaagaatttttaac |
707 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30288864 |
ttacatcagaaaacaggaaaaagaatcttcaaaccaaatacattattgtttacatgaaatgaataaaaaataaaagttgaaggaatgaagaatttttaac |
30288765 |
T |
|
| Q |
708 |
aacttattagccttggaacctgactcaacttacagttgcgaatcattgtttagaaattcaccttataatttcatcagatgcattaattgtttaatgcaat |
807 |
Q |
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|| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30288764 |
aaattatttggcttggagcctgactcaacttacagttgcgaatcattgtttagaaattcaccttataatttcatcagatgcattaattgtttaatgcaat |
30288665 |
T |
|
| Q |
808 |
aacaattagccagtgtgtccgacac----aatgtct-aaatatcaccagaa-----atctcatctgttac-tgattagagctgcctaggatttct-aact |
895 |
Q |
| |
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||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
30288664 |
aacaattagccagtgtgtccgacacattaaatgcctaaaatatcaccagaaatctcatctcatctgttacatgattagagctgcctaggatttctaaact |
30288565 |
T |
|
| Q |
896 |
caatctcatctgttacatgccttcatcattgttggacttggtgcgtgatacattcttagcttttcagtctaactctaacgtac-aaact-acttat-aaa |
992 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||| |
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| T |
30288564 |
caatctcatctgttacatgccttcatcattgttggacttggtgcgtgatacattcttagcttttcagtctaactcaaacgtacaaaactgacttataaaa |
30288465 |
T |
|
| Q |
993 |
tgatgattgcctaggctt |
1010 |
Q |
| |
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|||||||||||||||||| |
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| T |
30288464 |
tgatgattgcctaggctt |
30288447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 455 - 544
Target Start/End: Original strand, 26014777 - 26014866
Alignment:
| Q |
455 |
acttacatggtgaaagatatagcaaagacattctggcatgaacctcaaattagcagcctccccccatatgagcaggtaaagaccaatgta |
544 |
Q |
| |
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||||||||| || ||||||| ||||| ||||||||||| || |||||||| ||||| || |||||||| || || || ||||| ||||| |
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| T |
26014777 |
acttacatgatggtagatataacaaaggcattctggcataaatctcaaatttgcagcttctccccatataagaagatatagacccatgta |
26014866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 456 - 544
Target Start/End: Complemental strand, 52598953 - 52598865
Alignment:
| Q |
456 |
cttacatggtgaaagatatagcaaagacattctggcatgaacctcaaattagcagcctccccccatatgagcaggtaaagaccaatgta |
544 |
Q |
| |
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|||||||||||| ||||||||||||| || ||||||||||| || | || || || || |||||||| || ||||||||||| ||||| |
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| T |
52598953 |
cttacatggtgatagatatagcaaaggcactctggcatgaatcttaggttggccgcttcaccccatattagaaggtaaagacccatgta |
52598865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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