View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-3 (Length: 962)
Name: NF5387-Insertion-3
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 506
Target Start/End: Original strand, 37107033 - 37107524
Alignment:
| Q |
15 |
tagaatgctagatttcttacttggaagagttgatataatgaaagacttctacaccatcagagaaattgatgtgagaagcaggaagaacatgaggatcagc |
114 |
Q |
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| T |
37107033 |
tagaatgatagatttcttacttggaagagttgacataatgaaagacttctacaccatcagagaaattgatgtgagaagcaggaagaacatgaggatcagc |
37107132 |
T |
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| Q |
115 |
tataatttcatttccagtagtcttatcattggcaaggaccattcctactgcaccagctagaagagcttgctctcccttgtccactcttgcatttattcct |
214 |
Q |
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| T |
37107133 |
tataatttcatttccagtagtcttatcattggcaaggaccattcctactgcaccagctagaagagcttgctctcccttgtccactcttgcatttattcct |
37107232 |
T |
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| Q |
215 |
ctcaggcataatactatcttacccttcaccttcatgggatccagagttccattctggcaaagtacgctgcaataattattgaactcgttaatattacatt |
314 |
Q |
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| T |
37107233 |
ctcaggcataatactatcttacccttcaccttcttggggtccagagttccattctggcaaagtacgctgcaataattattgaactcgttaatattacatt |
37107332 |
T |
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| Q |
315 |
agcttcatataaactatactcactattatagcgttgtgtttatgccaaatgtaaatactgattcagcaatgatattcagttgtttgatacttacgcatct |
414 |
Q |
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| T |
37107333 |
agcttcatataaactatactcactattatagcgttgtgtttatgccaaatgtaaatactgattcagcaatgatattcagttgtttgatacttacgcatct |
37107432 |
T |
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| Q |
415 |
tcatttgttgcacttgccaatttagcatctgttgctttaataattgggtagaatttttgtgctaatattgcagtcgataagctttccccctt |
506 |
Q |
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| T |
37107433 |
tcatttgttgcacttgccaatttagcatctgttgctttaataattgggtagaacttgtctgctaatctggcagctgataagctttctccctt |
37107524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 671 - 962
Target Start/End: Original strand, 37108141 - 37108432
Alignment:
| Q |
671 |
tagaaaaggagacaaaccttgaagcttaaaccgttgcgtagaagaacataactagcgaactctctatccattgtactggcaccgactgtgatataccaag |
770 |
Q |
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||||||| |||||||||||||||| ||||| ||| | |||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
37108141 |
tagaaaaagagacaaaccttgaaggttaaattgttaccaagaacaacataactagggaactctctatccattgtgctggcaccaactgtgatataccaag |
37108240 |
T |
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| Q |
771 |
gagcaagattttctgcagtagcatcctttggtccatcattgccagcagagcaaacaacaacaatacctttcttagcagcatgg-aagatccaatagcaac |
869 |
Q |
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| T |
37108241 |
gagctagatttgatgcagtagcatcatttggtccactattgccagcagagcaaacaacaacaatacctttcttagcagcatggaaagatccaatagcaac |
37108340 |
T |
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| Q |
870 |
actatcattgaaaagggttagaagcaggagccacc-agtgacacagacaagacatcaacaccatcatggatagctgcatcaaatgctgcaagta |
962 |
Q |
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| T |
37108341 |
actatcattgaaaa-ggttagaagca-gagccaccaagtgacacagacaagacatcaacaccatcatggatagctgcatcaaatgctgcaagta |
37108432 |
T |
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