View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5387-Insertion-4 (Length: 840)

Name: NF5387-Insertion-4
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5387-Insertion-4
NF5387-Insertion-4
[»] chr1 (21 HSPs)
chr1 (8-840)||(67168-68003)
chr1 (737-803)||(43057234-43057300)
chr1 (740-803)||(20057892-20057955)
chr1 (740-803)||(20845834-20845897)
chr1 (691-805)||(16452057-16452171)
chr1 (691-805)||(16461210-16461324)
chr1 (740-803)||(20054253-20054316)
chr1 (740-803)||(20054709-20054772)
chr1 (740-803)||(20055165-20055228)
chr1 (740-803)||(20055621-20055684)
chr1 (740-803)||(20056077-20056140)
chr1 (740-803)||(20056533-20056596)
chr1 (740-803)||(20056980-20057043)
chr1 (740-803)||(20057436-20057499)
chr1 (687-772)||(16907175-16907260)
chr1 (556-607)||(45136782-45136833)
chr1 (691-773)||(2634864-2634946)
chr1 (740-796)||(52250123-52250179)
chr1 (740-803)||(38340816-38340879)
chr1 (740-803)||(43057696-43057759)
chr1 (743-796)||(10820509-10820562)
[»] chr4 (18 HSPs)
chr4 (691-803)||(27026414-27026526)
chr4 (737-803)||(3169116-3169182)
chr4 (691-804)||(33987189-33987302)
chr4 (740-803)||(50398705-50398768)
chr4 (740-803)||(1645916-1645979)
chr4 (740-803)||(12692166-12692229)
chr4 (691-786)||(17028801-17028896)
chr4 (718-803)||(8467944-8468029)
chr4 (740-803)||(4127605-4127668)
chr4 (740-803)||(4128057-4128120)
chr4 (740-803)||(39180716-39180779)
chr4 (741-803)||(23942954-23943016)
chr4 (690-803)||(27029188-27029301)
chr4 (737-804)||(23976383-23976450)
chr4 (742-804)||(29628836-29628898)
chr4 (691-777)||(50399111-50399197)
chr4 (740-793)||(23943405-23943458)
chr4 (742-803)||(33295347-33295408)
[»] chr6 (13 HSPs)
chr6 (697-803)||(1991461-1991567)
chr6 (691-804)||(2720688-2720801)
chr6 (740-803)||(6331085-6331148)
chr6 (740-803)||(20126355-20126418)
chr6 (740-803)||(20896861-20896924)
chr6 (740-803)||(2681389-2681452)
chr6 (740-803)||(3652889-3652952)
chr6 (740-803)||(20850231-20850294)
chr6 (736-801)||(15929111-15929176)
chr6 (740-793)||(23986490-23986543)
chr6 (740-803)||(11062196-11062259)
chr6 (737-803)||(21311881-21311947)
chr6 (740-801)||(3652398-3652459)
[»] chr3 (12 HSPs)
chr3 (740-804)||(39653073-39653137)
chr3 (752-803)||(2911005-2911056)
chr3 (691-803)||(16811291-16811403)
chr3 (740-803)||(25803177-25803240)
chr3 (740-803)||(28561656-28561719)
chr3 (740-803)||(39653530-39653593)
chr3 (553-624)||(54437595-54437665)
chr3 (691-793)||(16810845-16810947)
chr3 (740-803)||(11180206-11180269)
chr3 (756-803)||(25238860-25238907)
chr3 (740-805)||(13155375-13155439)
chr3 (740-801)||(50347658-50347719)
[»] chr5 (15 HSPs)
chr5 (691-806)||(20039598-20039713)
chr5 (740-804)||(34371521-34371585)
chr5 (740-803)||(2193726-2193789)
chr5 (740-803)||(15513186-15513249)
chr5 (740-803)||(18304341-18304404)
chr5 (740-803)||(34371978-34372041)
chr5 (804-840)||(22780342-22780378)
chr5 (553-624)||(22780391-22780462)
chr5 (804-838)||(2243316-2243350)
chr5 (755-804)||(42788833-42788882)
chr5 (740-804)||(5067063-5067127)
chr5 (740-804)||(17445628-17445692)
chr5 (740-803)||(34867700-34867763)
chr5 (740-803)||(39146849-39146912)
chr5 (693-803)||(21886272-21886382)
[»] chr2 (13 HSPs)
chr2 (691-804)||(29804591-29804704)
chr2 (742-803)||(33174868-33174929)
chr2 (740-795)||(27883099-27883154)
chr2 (740-803)||(33770920-33770983)
chr2 (740-803)||(41754199-41754262)
chr2 (740-804)||(25338170-25338234)
chr2 (740-806)||(25434229-25434295)
chr2 (555-624)||(2248983-2249052)
chr2 (565-604)||(4568981-4569020)
chr2 (740-803)||(8256436-8256499)
chr2 (768-803)||(20179098-20179133)
chr2 (804-838)||(16576289-16576323)
chr2 (740-785)||(18448091-18448136)
[»] chr8 (13 HSPs)
chr8 (740-796)||(27022511-27022567)
chr8 (740-803)||(10844793-10844856)
chr8 (740-803)||(22026289-22026352)
chr8 (740-803)||(22549168-22549231)
chr8 (740-803)||(27925809-27925872)
chr8 (691-804)||(8080466-8080579)
chr8 (740-803)||(28453249-28453312)
chr8 (740-803)||(32292307-32292370)
chr8 (740-802)||(25307676-25307738)
chr8 (740-804)||(12827427-12827491)
chr8 (742-806)||(41659280-41659343)
chr8 (740-803)||(22840702-22840765)
chr8 (555-624)||(39280912-39280981)
[»] scaffold0243 (1 HSPs)
scaffold0243 (740-803)||(1130-1193)
[»] chr7 (12 HSPs)
chr7 (740-803)||(6747771-6747834)
chr7 (740-803)||(34405764-34405827)
chr7 (743-804)||(2463551-2463612)
chr7 (740-803)||(2189054-2189117)
chr7 (740-803)||(10430673-10430736)
chr7 (565-602)||(8448081-8448118)
chr7 (756-803)||(2189510-2189557)
chr7 (740-803)||(2611825-2611888)
chr7 (752-795)||(35527305-35527348)
chr7 (740-787)||(36422178-36422225)
chr7 (741-803)||(679727-679789)
chr7 (644-690)||(6718926-6718971)
[»] scaffold0088 (1 HSPs)
scaffold0088 (740-803)||(23583-23646)
[»] scaffold0168 (1 HSPs)
scaffold0168 (742-804)||(2651-2713)
[»] scaffold0391 (1 HSPs)
scaffold0391 (740-797)||(14658-14715)
[»] scaffold0333 (1 HSPs)
scaffold0333 (740-804)||(4470-4534)
[»] scaffold1126 (1 HSPs)
scaffold1126 (740-799)||(1089-1148)
[»] scaffold0002 (1 HSPs)
scaffold0002 (740-805)||(151549-151613)


Alignment Details
Target: chr1 (Bit Score: 754; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 8 - 840
Target Start/End: Original strand, 67168 - 68003
Alignment:
Q  8 aatttaaacaaacaaagatatcactgcaccttctaggaatggcaaaaaatatatatatagtaaaatggaaaatttcaaagaagggtccaaatgcctaaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  67168 aatttaaacaaacaaagatatcactgcaccttctaggaatggcaaataaaatatatatagtaaaatggaaaatttcaaagaagggtccaaatgcctaaat 67267  T
Q  108 gcctacatcattgctggctcttactatagggttttaaaggcaatcacatgcattggtttgtcacataa---tagctcatatacattgaacacgctaatta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||    
T  67268 gcctacatcattgctggctcttactatagggttttaaaggcaatcacatgcattggtttgttacataataatagctcatatacattgaacacgctaatta 67367  T
Q  205 tataggtgtgaatatatgaattagatatataatgaactagtagtatttctaatttctaatcaaattaagtaatataattggttaattcacaacaaagtac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  67368 tataggtgtgaatatatgaattagatatataatgaactagtagtatttctaatttctaatcaaattaagtaatataattggttaattcacaacaaagtag 67467  T
Q  305 taatttataaatgatcataacccatgactgagaaaaagatggttatagttagttcaatcaactaaagcttataatttgctttcttaactcttcgttctta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  67468 taatttataaatgatcataacccatgactgagaaaaagatggttatagttagttcaatcaactaaagcttataatttgctttcttaactcttcgttctta 67567  T
Q  405 gggaaatgaggtcttataaactaaattttgatcaatagttaagtaaagtatatggttaatgatagtttaagctaggatccaaattcggattattttaaat 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  67568 gggaaatgaggtcttataaactaaattttgatcaatagttaagtaaagtatatggttaatgatagtttgagctaggatccaaattcagattattttaaat 67667  T
Q  505 ggtttgttattaggttttttctacgttgcccccttatgaattggtggaggtaatttacctctatcaaagaaaagactcattttcttcatctttattatta 604  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  67668 ggtttgttattaggttttttctaggttgcccccttatgaattggtggaggtaatttacctctatcaaagaaaagactcattttcttcatctttattatta 67767  T
Q  605 caaagggttaccattttcattttaagaacgtattaaacttgtaacatcccagacgacttttcaagattgctgactaaccccacaaaatccctctcattcc 704  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  67768 caaagggttaccattttcattttatgaacatattaaacttgtaacatcccagacgacttttcaagattgccaactaaccccacaaaatccctctcattcc 67867  T
Q  705 gatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  67868 gatgtgatttgattttcctagaagctaccaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacctcgggcattacaa 67967  T
Q  805 aacttcttcatatccttcattcaacatgtgatcttc 840  Q
    |||||||||||||||||||||| |||||||||||||    
T  67968 aacttcttcatatccttcattctacatgtgatcttc 68003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 737 - 803
Target Start/End: Original strand, 43057234 - 43057300
Alignment:
Q  737 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||| ||||||    
T  43057234 agtcgctcattgtcatgccttgtgcaccggcaaccactccccgtcctcgtcagccttgggtgttaca 43057300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20057892 - 20057955
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  20057892 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcaaccttgggtgttaca 20057955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20845834 - 20845897
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  20845834 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgttaca 20845897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 691 - 805
Target Start/End: Original strand, 16452057 - 16452171
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  16452057 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagc 16452156  T
Q  791 cttgggcgttacaaa 805  Q
    |||||| ||||||||    
T  16452157 cttgggtgttacaaa 16452171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 691 - 805
Target Start/End: Original strand, 16461210 - 16461324
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  16461210 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagc 16461309  T
Q  791 cttgggcgttacaaa 805  Q
    |||||| ||||||||    
T  16461310 cttgggtgttacaaa 16461324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20054253 - 20054316
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20054253 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20054709 - 20054772
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20054709 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20055165 - 20055228
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20055165 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20055621 - 20055684
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20055621 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20055684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20056077 - 20056140
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20056077 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20056533 - 20056596
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20056533 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20056596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20056980 - 20057043
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20056980 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20057436 - 20057499
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  20057436 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 20057499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 687 - 772
Target Start/End: Complemental strand, 16907260 - 16907175
Alignment:
Q  687 caaaatccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgacca 772  Q
    ||||||||||||||||  ||| ||||||| |||||||||||||| | |  || |||| ||||||||||||||| ||| ||||||||    
T  16907260 caaaatccctctcattttgatatgatttggtttgcctagaagctgccaggagccgctgattgtcatgtcttgtgcactggcgacca 16907175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 556 - 607
Target Start/End: Complemental strand, 45136833 - 45136782
Alignment:
Q  556 aatttacctctatcaaagaaaagactcattttcttcatctttattattacaa 607  Q
    |||||||| |||||||||||||  ||||||||||||||||||||| ||||||    
T  45136833 aatttacccctatcaaagaaaaatctcattttcttcatctttattcttacaa 45136782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 773
Target Start/End: Complemental strand, 2634946 - 2634864
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccac 773  Q
    ||||||||||||||||| ||||| |||||||||||||| | | |  || | | |||||||||| ||||| |||||||||||||    
T  2634946 atccctctcattccgatgtgattcgatttgcctagaagttgctaggagccacacattgtcatgccttgtgcaccggcgaccac 2634864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 796
Target Start/End: Complemental strand, 52250179 - 52250123
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 796  Q
    ||||||||||| || ||||| ||||||||||| ||||||| |||||||| |||||||    
T  52250179 cgctcattgtcgtgccttgtgcaccggcgaccgctccccgccctcgtcagccttggg 52250123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 38340879 - 38340816
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||| |||||||||||  |||||||| ||||||| ||||||    
T  38340879 cgctcattgtcgtgccttgtgcaccggtgaccactccccaccctcgtcagccttgggtgttaca 38340816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 43057696 - 43057759
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||| |||| ||||| |||||||||||| |||||| |||| ||| ||||||| ||||||    
T  43057696 cgctcattggcatgccttgtgcaccggcgaccattccccgccctcttcagccttgggtgttaca 43057759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 796
Target Start/End: Complemental strand, 10820562 - 10820509
Alignment:
Q  743 tcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 796  Q
    |||||||||||  |||| |||||||||||||| ||| ||||||||| |||||||    
T  10820562 tcattgtcatgctttgtgcaccggcgaccacttcccatcctcgtcagccttggg 10820509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 691 - 803
Target Start/End: Complemental strand, 27026526 - 27026414
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||| ||| ||||| | |||||||| ||||||| |  ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||| |    
T  27026526 atccctctcattctgatgtgattcggtttgcctaaaagctaccaggagtcgctcattgtcatgccttgtgcaccgacgaccactccccgttctcgtcagc 27026427  T
Q  791 cttgggcgttaca 803  Q
    || ||||||||||    
T  27026426 ctcgggcgttaca 27026414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 3169182 - 3169116
Alignment:
Q  737 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  3169182 agtcgctcattgtcgtgtcttgtgcaccggtgaccactccccgtcctcgtcaaccttgggtgttaca 3169116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 691 - 804
Target Start/End: Original strand, 33987189 - 33987302
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| |||||   |||||||||||||| | || ||||||||||||||||| ||||| ||| | |||||||||| | |||||| || |    
T  33987189 atccctctcattccgatgtgattcagtttgcctagaagctgccaagagtcgctcattgtcatgccttgtgcactgacgaccactcctcatcctcgccagc 33987288  T
Q  791 cttgggcgttacaa 804  Q
    || || ||||||||    
T  33987289 ctcggacgttacaa 33987302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 50398705 - 50398768
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  50398705 cgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 50398768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 1645916 - 1645979
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  1645916 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 1645979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 12692166 - 12692229
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  12692166 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 12692229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 691 - 786
Target Start/End: Complemental strand, 17028896 - 17028801
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgt 786  Q
    ||||||||||||||||| |||||   |||||||||||||| |||  || | |||||||||||| ||||| ||||| |||||||| | |||||||||    
T  17028896 atccctctcattccgatgtgattcagtttgcctagaagctgcaaggagcctctcattgtcatgccttgtgcaccgccgaccactacacgtcctcgt 17028801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 718 - 803
Target Start/End: Original strand, 8467944 - 8468029
Alignment:
Q  718 ttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||||| | |  || ||| || ||||||| ||||| ||| ||||||||||||||| |||||||||||| ||||||||||    
T  8467944 ttgcctagaagctgccaggagccgcgcaatgtcatgccttgtgcactggcgaccactccccgccctcgtcaacctcgggcgttaca 8468029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 4127605 - 4127668
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||||  |||||| ||||||    
T  4127605 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgttaca 4127668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 4128057 - 4128120
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||||||||||||| || |||||||| ||||||| ||||||    
T  4128057 cgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 4128120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 39180716 - 39180779
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||| |||||||||| |||||| || |||||||||||||||||| |||  |||||||||    
T  39180716 cgctcattgccatgtcttgtgcaccggtgatcactccccgtcctcgtcagcctcaggcgttaca 39180779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 741 - 803
Target Start/End: Original strand, 23942954 - 23943016
Alignment:
Q  741 gctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||| || ||||| ||||||||||||||||||| |||||||| |||| || ||||||    
T  23942954 gctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttaggtgttaca 23943016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 803
Target Start/End: Complemental strand, 27029301 - 27029188
Alignment:
Q  690 aatccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaa 789  Q
    |||||||||||||| ||| | ||| | ||| |||| ||||||| | ||| |||||||||||||   |||| ||  ||||||||||||||| ||||||||     
T  27029301 aatccctctcattctgatgtaattcggttttcctataagctaccagaagccgctcattgtcatacattgtgcattggcgaccactccccgccctcgtcag 27029202  T
Q  790 ccttgggcgttaca 803  Q
    ||| ||| ||||||    
T  27029201 cctcgggtgttaca 27029188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 804
Target Start/End: Original strand, 23976383 - 23976450
Alignment:
Q  737 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    |||||||||||| ||||| |||| ||||||| | |||||||||||||| | | || ||||||||||||    
T  23976383 agtcgctcattgccatgtattgtgcaccggcaatcactccccgtcctcataagccatgggcgttacaa 23976450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 742 - 804
Target Start/End: Original strand, 29628836 - 29628898
Alignment:
Q  742 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||| | || ||||| |||||||||||||||||||||||||||  ||||||  |||||||    
T  29628836 ctcattggcgtgccttgtgcaccggcgaccactccccgtcctcgtccgccttggatgttacaa 29628898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 777
Target Start/End: Original strand, 50399111 - 50399197
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccc 777  Q
    ||||||||||||||||| ||||| |  ||| ||||||| |   | ||| |||||||||||||| ||||| ||| |||||||||||||    
T  50399111 atccctctcattccgatgtgattcggcttgtctagaagttgtcagaagccgctcattgtcatgccttgtgcactggcgaccactccc 50399197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 23943405 - 23943458
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacctt 793  Q
    ||||||||||| || ||  ||||||||||||||||| |||||||||||| ||||    
T  23943405 cgctcattgtcgtgcctcatacaccggcgaccactctccgtcctcgtcatcctt 23943458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 803
Target Start/End: Original strand, 33295347 - 33295408
Alignment:
Q  742 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||||||| || |||| |||||| | |||||| |||| ||| ||||||||||    
T  33295347 ctcattgtcatgtcttgtgcatcggcaaccactgcacgtccttgtcatcctcgggcgttaca 33295408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 697 - 803
Target Start/End: Complemental strand, 1991567 - 1991461
Alignment:
Q  697 ctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 796  Q
    ||||||||||| ||||||| |||||||||||||||| |  |||||| ||||||||||  |||| || ||||||||||||| |||||| |||| ||| | |    
T  1991567 ctcattccgatgtgatttggtttgcctagaagctaccaggagtcgcacattgtcatgcattgtgcatcggcgaccactcctcgtccttgtcagcctcgag 1991468  T
Q  797 cgttaca 803  Q
    |||||||    
T  1991467 cgttaca 1991461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 691 - 804
Target Start/End: Original strand, 2720688 - 2720801
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||| | ||||||| || | |||||||||     ||||||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  2720688 atccctctcattccggtatgatttggttcgtctagaagctgtccgaagtcgctcattgtcgtgacttgtgcaccggcgaccactccccgccctcgtcagc 2720787  T
Q  791 cttgggcgttacaa 804  Q
    ||| || |||||||    
T  2720788 cttaggtgttacaa 2720801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 6331085 - 6331148
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||| ||||| ||||||||||||||||||  |||||||| ||||||| ||||||    
T  6331085 cgctcattgtcatgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgttaca 6331148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20126355 - 20126418
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||  ||||||| ||||||    
T  20126355 cgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcggccttgggtgttaca 20126418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 20896861 - 20896924
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||| ||||| || |||||||||||| |||||||||||| ||||||| ||||||    
T  20896861 cgctcattgtcatgccttgtgcaacggcgaccactctccgtcctcgtcagccttgggtgttaca 20896924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 2681389 - 2681452
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || |||||  |||||||||||||||||| |||||||| ||||||| ||||||    
T  2681389 cgctcattgtcgtgccttgtgtaccggcgaccactccccgccctcgtcagccttgggtgttaca 2681452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 3652952 - 3652889
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||||  |||||| ||||||    
T  3652952 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgttaca 3652889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 20850294 - 20850231
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||||||||||||| || |||||||| ||||||| ||||||    
T  20850294 cgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 20850231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 736 - 801
Target Start/End: Complemental strand, 15929176 - 15929111
Alignment:
Q  736 aagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgtta 801  Q
    |||||||||||||||||| |||||||| | |||||||||||||  |||| ||| ||||||| ||||    
T  15929176 aagtcgctcattgtcatgccttgtacatcagcgaccactccccaccctcatcagccttgggtgtta 15929111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 793
Target Start/End: Original strand, 23986490 - 23986543
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacctt 793  Q
    |||||||||||||| ||||| ||||| ||||||||||||| |||||||| ||||    
T  23986490 cgctcattgtcatgccttgtgcaccgacgaccactccccgccctcgtcagcctt 23986543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 11062259 - 11062196
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||| |||||||||||| | |||| | ||||||||||||||    
T  11062259 cgctcattgtcgtgccttgtgcaccggtgaccactccccgccttcgtaagccttgggcgttaca 11062196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 21311947 - 21311881
Alignment:
Q  737 agtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||  || ||||| ||| |||||||||| |||| |||||||| ||||||| ||||||    
T  21311947 agtcgctcattgttgtgccttgtgcactggcgaccacttcccgccctcgtcagccttgggtgttaca 21311881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 801
Target Start/End: Complemental strand, 3652459 - 3652398
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgtta 801  Q
    ||||||||||| || ||||| ||||| ||||||||||||| |||| ||| ||||||| ||||    
T  3652459 cgctcattgtcgtgccttgtgcaccgacgaccactccccgccctcatcagccttgggtgtta 3652398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 740 - 804
Target Start/End: Complemental strand, 39653137 - 39653073
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  39653137 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgttacaa 39653073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 752 - 803
Target Start/End: Complemental strand, 2911056 - 2911005
Alignment:
Q  752 tgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||||    
T  2911056 tgtcttgtgcaccggcgaccactccccgtcctcgtcaatcttgggtgttaca 2911005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 803
Target Start/End: Complemental strand, 16811403 - 16811291
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||  |||||||| |    
T  16811403 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagc 16811304  T
Q  791 cttgggcgttaca 803  Q
    |||||| ||||||    
T  16811303 cttgggtgttaca 16811291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 25803177 - 25803240
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||| ||| ||||| |||| |||||||||||||||||| |||| ||||||| ||||||    
T  25803177 cgctcattgttatgccttgtgcaccagcgaccactccccgtcctagtcagccttgggtgttaca 25803240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 28561719 - 28561656
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||||  |||||| ||||||    
T  28561719 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgttaca 28561656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 39653593 - 39653530
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||  |||||||| ||||||| ||||||    
T  39653593 cgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgttaca 39653530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 553 - 624
Target Start/End: Original strand, 54437595 - 54437665
Alignment:
Q  553 ggtaatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 624  Q
    ||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||    |||||||||||||    
T  54437595 ggtaatttacc-ctatcaaaggaaaaactcattttcctcatctttattattacaacaaattaccattttcat 54437665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 793
Target Start/End: Complemental strand, 16810947 - 16810845
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || ||||||||||| || ||||| ||||||||||||||||||| |||||||| |    
T  16810947 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagc 16810848  T
Q  791 ctt 793  Q
    |||    
T  16810847 ctt 16810845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 11180206 - 11180269
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| |  ||||| ||||||||||||||||||| |||| ||| ||||||| ||||||    
T  11180206 cgctcattgtcgtaccttgtgcaccggcgaccactccccgccctcttcagccttgggtgttaca 11180269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 803
Target Start/End: Original strand, 25238860 - 25238907
Alignment:
Q  756 ttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  25238860 ttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 25238907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 805
Target Start/End: Original strand, 13155375 - 13155439
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaa 805  Q
    ||||||||||| || ||||| ||||||||| ||||||||| |||||||| | ||||| ||||||||    
T  13155375 cgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcgtcagcattgggtgttacaaa 13155439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 801
Target Start/End: Complemental strand, 50347719 - 50347658
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgtta 801  Q
    ||||||||||| |  ||||| ||||||||| ||||||||| |||||||| ||||||| ||||    
T  50347719 cgctcattgtcgttccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgtta 50347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 691 - 806
Target Start/End: Original strand, 20039598 - 20039713
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| ||||| | |||| |||||||||      ||  ||||||||||||| ||||| |||||||||||| |||||| |||||||| |    
T  20039598 atccctctcattccgatgtgattcggtttgtctagaagctgtcgggagctgctcattgtcatgccttgtgcaccggcgaccattccccgccctcgtcagc 20039697  T
Q  791 cttgggcgttacaaaa 806  Q
    |||||| |||||||||    
T  20039698 cttgggtgttacaaaa 20039713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 740 - 804
Target Start/End: Complemental strand, 34371585 - 34371521
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| |||||||    
T  34371585 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacaa 34371521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 2193789 - 2193726
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  2193789 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 2193726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 15513186 - 15513249
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||| || || ||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  15513186 cgctcattatcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgttaca 15513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 18304404 - 18304341
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||||  |||||| ||||||    
T  18304404 cgctcattgtcgtgtcttgtgcaccggcgatcactccccgtcctcgtcagtcttgggtgttaca 18304341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 34372041 - 34371978
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  34372041 cgctcattgtcctgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34371978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 840
Target Start/End: Complemental strand, 22780378 - 22780342
Alignment:
Q  804 aaacttcttcatatccttcattcaacatgtgatcttc 840  Q
    |||||||||||||||||||||||||||||||||||||    
T  22780378 aaacttcttcatatccttcattcaacatgtgatcttc 22780342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 553 - 624
Target Start/End: Complemental strand, 22780462 - 22780391
Alignment:
Q  553 ggtaatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 624  Q
    |||||| |||||| ||||||||||| |||||||||||| ||||||| |||| ||| | || |||||||||||    
T  22780462 ggtaatatacctcaatcaaagaaaaaactcattttcttaatctttactatttcaatgagtcaccattttcat 22780391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 804 - 838
Target Start/End: Complemental strand, 2243350 - 2243316
Alignment:
Q  804 aaacttcttcatatccttcattcaacatgtgatct 838  Q
    |||||||||||||||||||||||||||||||||||    
T  2243350 aaacttcttcatatccttcattcaacatgtgatct 2243316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 804
Target Start/End: Original strand, 42788833 - 42788882
Alignment:
Q  755 cttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||| ||||||||||||||||||| |||||||| ||||||| |||||||    
T  42788833 cttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacaa 42788882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 804
Target Start/End: Original strand, 5067063 - 5067127
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||||  |||||||  |||||||||||||||||| ||||||||| || |||| |||||||    
T  5067063 cgctcattgttgtgtcttgcgcaccggcgaccactccccatcctcgtcagccatgggtgttacaa 5067127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 804
Target Start/End: Original strand, 17445628 - 17445692
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||| |||| ||||| ||||| ||||||||||||||||| || | ||||||| |||||||    
T  17445628 cgctcattgccatgccttgtgcaccgtcgaccactccccgtccttgttagccttgggtgttacaa 17445692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 34867763 - 34867700
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||||||| ||||| || |||||||| ||||||| ||||||    
T  34867763 cgctcattgtcgtgccttgtgcaccggcgactactcctcgccctcgtcagccttgggtgttaca 34867700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 39146912 - 39146849
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||| ||||||||  |||||||| ||||||| ||||||    
T  39146912 cgctcattgtcgtgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttaca 39146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 693 - 803
Target Start/End: Original strand, 21886272 - 21886382
Alignment:
Q  693 ccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaacct 792  Q
    ||||||||||||| | ||||| | ||   ||||||||||| |  || ||||||||||| || ||||| ||||||||||||||| ||| |||| ||| |||    
T  21886272 ccctctcattccggtgtgattcggttcctctagaagctaccaggagccgctcattgtcgtgccttgtgcaccggcgaccactctccgccctcatcagcct 21886371  T
Q  793 tgggcgttaca 803  Q
    | || ||||||    
T  21886372 tcggtgttaca 21886382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 691 - 804
Target Start/End: Complemental strand, 29804704 - 29804591
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| ||||| ||||   |||||||||      || |||||||| || || ||||| |||||||||||||||||||||||||||| |    
T  29804704 atccctctcattccgatgtgattcgattcctctagaagctgtcgggagccgctcattatcgtgccttgtgcaccggcgaccactccccgtcctcgtcagc 29804605  T
Q  791 cttgggcgttacaa 804  Q
    |||||| |||||||    
T  29804604 cttgggtgttacaa 29804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 742 - 803
Target Start/End: Complemental strand, 33174929 - 33174868
Alignment:
Q  742 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  33174929 ctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 33174868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 27883099 - 27883154
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgg 795  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||    
T  27883099 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgg 27883154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 33770983 - 33770920
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  33770983 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 33770920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 41754262 - 41754199
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  41754262 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttgggtgttaca 41754199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 804
Target Start/End: Original strand, 25338170 - 25338234
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||||| || ||||| |||||||||||||||| || |||||||| ||||||| |||||||    
T  25338170 cgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttacaa 25338234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 806
Target Start/End: Original strand, 25434229 - 25434295
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaaa 806  Q
    ||||||||||| || ||||| |||||||| |||||||||| |||||||| ||||| | |||||||||    
T  25434229 cgctcattgtcgtgccttgtgcaccggcggccactccccgccctcgtcagccttgtgtgttacaaaa 25434295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 624
Target Start/End: Complemental strand, 2249052 - 2248983
Alignment:
Q  555 taatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 624  Q
    |||||||||||||||||||||||  |  |||||||||||||||||| ||| ||   ||||||||||||||    
T  2249052 taatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcat 2248983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 604
Target Start/End: Original strand, 4568981 - 4569020
Alignment:
Q  565 ctatcaaagaaaagactcattttcttcatctttattatta 604  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  4568981 ctatcaaagaaaaaactcattttcttcatctctattatta 4569020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 8256499 - 8256436
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||||||| |||||||  |||||||| ||||||| ||||||    
T  8256499 cgctcattgtcgtgccttgtgcaccggcgactactccccaccctcgtcagccttgggtgttaca 8256436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 803
Target Start/End: Complemental strand, 20179133 - 20179098
Alignment:
Q  768 gaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||||||||||||||||||||| ||||||    
T  20179133 gaccactccccgtcctcgtcaaccttgggtgttaca 20179098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 804 - 838
Target Start/End: Original strand, 16576289 - 16576323
Alignment:
Q  804 aaacttcttcatatccttcattcaacatgtgatct 838  Q
    |||||||||||| ||||||||||||||||||||||    
T  16576289 aaacttcttcatctccttcattcaacatgtgatct 16576323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 785
Target Start/End: Original strand, 18448091 - 18448136
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcg 785  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||    
T  18448091 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcg 18448136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 740 - 796
Target Start/End: Original strand, 27022511 - 27022567
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttggg 796  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||    
T  27022511 cgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttggg 27022567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 10844856 - 10844793
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  10844856 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 10844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 22026352 - 22026289
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||| ||||| |||||||||||||||| || |||||||| ||||||| ||||||    
T  22026352 cgctcattgtcatgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 22026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 22549168 - 22549231
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  22549168 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 22549231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 27925872 - 27925809
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||| ||||||||||||||||||||||| ||||||| ||||||    
T  27925872 cgctcattgtcgtgccttgtgcaccagcgaccactccccgtcctcgtcagccttgggtgttaca 27925809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 691 - 804
Target Start/End: Original strand, 8080466 - 8080579
Alignment:
Q  691 atccctctcattccgatttgatttgatttgcctagaagctacaaaaagtcgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaac 790  Q
    ||||||||||||||||| |||||   ||   |||||||||   || || ||||||||||| || ||||| |||||||||||||||| || |||||||| |    
T  8080466 atccctctcattccgatgtgattcagttcctctagaagctgttaagagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagc 8080565  T
Q  791 cttgggcgttacaa 804  Q
    |||||| |||||||    
T  8080566 cttgggtgttacaa 8080579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 28453312 - 28453249
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||| ||||||||||| |||||||| ||||||| ||||||    
T  28453312 cgctcattgtcgtgccttgtgcaccggcaaccactccccgccctcgtcagccttgggtgttaca 28453249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 32292370 - 32292307
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||| ||||||||| |||||||| ||||||| ||||||    
T  32292370 cgctcattgtcgtgccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgttaca 32292307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 802
Target Start/End: Complemental strand, 25307738 - 25307676
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttac 802  Q
    ||||||||||| |||||||||||||| | ||||||||| | |||||||| ||||||| |||||    
T  25307738 cgctcattgtcgtgtcttgtacaccgactaccactcccggccctcgtcagccttgggtgttac 25307676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 804
Target Start/End: Original strand, 12827427 - 12827491
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||||| || ||||| ||||||||| ||||||||  |||||||| ||||||| |||||||    
T  12827427 cgctcattgtcgtgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgttacaa 12827491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 742 - 806
Target Start/End: Original strand, 41659280 - 41659343
Alignment:
Q  742 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaaa 806  Q
    ||||||||| || ||||| ||||||||||||||||||| |||||||| |||| || |||||||||    
T  41659280 ctcattgtcgtg-cttgtgcaccggcgaccactccccgccctcgtcagccttaggtgttacaaaa 41659343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 22840702 - 22840765
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||| || |||||| | ||||||||||||||||||| ||| |||| ||||||| ||||||    
T  22840702 cgctcattatcgtgtcttatgcaccggcgaccactccccgcccttgtcagccttgggtgttaca 22840765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 624
Target Start/End: Original strand, 39280912 - 39280981
Alignment:
Q  555 taatttacctctatcaaagaaaagactcattttcttcatctttattattacaaagggttaccattttcat 624  Q
    ||||||||| |||||||||||||  | | ||||||||||||||||| ||| ||   ||||||||||||||    
T  39280912 taatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccattttcat 39280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 1193 - 1130
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  1193 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 6747771 - 6747834
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||||||| ||||| ||||||||||||||||| | |||||||| ||||||| ||||||    
T  6747771 cgctcattgtcatgccttgtgcaccggcgaccactccctgccctcgtcagccttgggtgttaca 6747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 34405764 - 34405827
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  34405764 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34405827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 743 - 804
Target Start/End: Complemental strand, 2463612 - 2463551
Alignment:
Q  743 tcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||| ||||||| |||||||    
T  2463612 tcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacaa 2463551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 2189117 - 2189054
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||| ||||| | ||||||    
T  2189117 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttgagtgttaca 2189054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 10430736 - 10430673
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||| ||| ||||||| ||||||    
T  10430736 cgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcatcagccttgggtgttaca 10430673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 602
Target Start/End: Complemental strand, 8448118 - 8448081
Alignment:
Q  565 ctatcaaagaaaagactcattttcttcatctttattat 602  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8448118 ctatcaaagaaaaaactcattttcttcatctttattat 8448081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 803
Target Start/End: Complemental strand, 2189557 - 2189510
Alignment:
Q  756 ttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||| ||||||||||||||||||| |||||||| ||||||| ||||||    
T  2189557 ttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 2189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 2611825 - 2611888
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| ||||||||||||||||||  |||||||| |||| || ||||||    
T  2611825 cgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagcctttggtgttaca 2611888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 752 - 795
Target Start/End: Original strand, 35527305 - 35527348
Alignment:
Q  752 tgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgg 795  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||    
T  35527305 tgtcttgtgcaccgacgaccactccccgtcctcgtcagccttgg 35527348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 787
Target Start/End: Complemental strand, 36422225 - 36422178
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtc 787  Q
    ||||||||||| || ||||| |||||||||||||||||| ||||||||    
T  36422225 cgctcattgtcgtgccttgtgcaccggcgaccactccccatcctcgtc 36422178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 741 - 803
Target Start/End: Complemental strand, 679789 - 679727
Alignment:
Q  741 gctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    |||||||||| ||  |||| || ||||||||||||||||||||||||| |||| || ||||||    
T  679789 gctcattgtcgtgctttgtgcatcggcgaccactccccgtcctcgtcagccttaggtgttaca 679727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 644 - 690
Target Start/End: Original strand, 6718926 - 6718971
Alignment:
Q  644 tgtaacatcccagacgacttttcaagattgctgactaaccccacaaa 690  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||    
T  6718926 tgtaacatcccagacgactttt-aggattgctgactgaccccacaaa 6718971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 740 - 803
Target Start/End: Complemental strand, 23646 - 23583
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttaca 803  Q
    ||||||||||| || ||||| |||||||||||| |||||| |||||||| ||||||| ||||||    
T  23646 cgctcattgtcgtgccttgtgcaccggcgaccattccccgccctcgtcagccttgggtgttaca 23583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 742 - 804
Target Start/End: Complemental strand, 2713 - 2651
Alignment:
Q  742 ctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||| || ||||| | ||||||||||||||||| |||||||| ||||||| |||||||    
T  2713 ctcattgtcgtgccttgtgctccggcgaccactccccgccctcgtcagccttgggtgttacaa 2651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 740 - 797
Target Start/End: Complemental strand, 14715 - 14658
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggc 797  Q
    |||||||||||||| ||| | ||||||||||||||| |||||||||||| ||| ||||    
T  14715 cgctcattgtcatgccttttgcaccggcgaccactctccgtcctcgtcagcctcgggc 14658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 804
Target Start/End: Complemental strand, 4534 - 4470
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaa 804  Q
    ||||||||||| || ||||| |||||||| ||||||| || |||||||| ||||||| |||||||    
T  4534 cgctcattgtcgtgccttgtgcaccggcggccactcctcgccctcgtcagccttgggtgttacaa 4470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 799
Target Start/End: Original strand, 1089 - 1148
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgt 799  Q
    |||||||||||||||||||| ||||  ||| |||||||| |||| |||||||| ||||||    
T  1089 cgctcattgtcatgtcttgtgcaccaacgatcactccccatccttgtcaacctcgggcgt 1148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 805
Target Start/End: Complemental strand, 151613 - 151549
Alignment:
Q  740 cgctcattgtcatgtcttgtacaccggcgaccactccccgtcctcgtcaaccttgggcgttacaaa 805  Q
    ||||||||||| || ||||| ||||||||| ||||||||| |||||||| | ||||| ||||||||    
T  151613 cgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcgtcagcattgggtgttacaaa 151549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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