View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-5 (Length: 620)
Name: NF5387-Insertion-5
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 84 - 620
Target Start/End: Original strand, 11770979 - 11771515
Alignment:
| Q |
84 |
ctcacatgatgaaacttcactgggcgagtttcagttatcttgtcatgaatactctctaatctaagtttctccgtgaataatcactcctaatcttatattg |
183 |
Q |
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| T |
11770979 |
ctcacatgatgaaacttcactgggcgagtttcagttatcttgtcatgaatactctctaatctaagtttctctgtgaataatcactcctaatcttatattg |
11771078 |
T |
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| Q |
184 |
tttccgtgtatttctagttttatagtaatgataaagttttctggttatatagcttttggataaaggtttcctttgattttgattggcatgttgcaactaa |
283 |
Q |
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| T |
11771079 |
tttccgtgtatttctagttttatagtaatgataaagttttctggttatatagcttttggataaaggtttcctttgattttgattagcatgttgcaactaa |
11771178 |
T |
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| Q |
284 |
agcgatcacgttgctatcttcaatccttttaataatctaccatattacaagcaattgaagattttaatttgtatgttctgttatacatttaatatcatgt |
383 |
Q |
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| T |
11771179 |
agcgatcacgttgctatcttcaatccttttaataatctaccattttacaagcaattgaaggttttaatttgtatgttatgttatacatttaatatcatgt |
11771278 |
T |
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| Q |
384 |
gtacttgacttgttactgtttggaacagtccttgaccctcactgtctggtgggcaataccagttatttggcttccagttgtatgttggtttgtatataac |
483 |
Q |
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| T |
11771279 |
gtacttgacttgttactgtttggaacagtccttgaccctcactgtctggtgggcaataccagttatttggcttccagttgtatgttggtttgtatataac |
11771378 |
T |
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| Q |
484 |
tctatacaaatgggcctcagctgtccacatatagctctgatggtggttcttggcatttttgtgtggacattgcttgagtatacattgcaccgttttcttt |
583 |
Q |
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| T |
11771379 |
tctatacaaatgggcctcagctgtccacatatagctctgatggtggttcttggcatttttgtgtggacattgcttgagtatacattgcaccgttttcttt |
11771478 |
T |
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| Q |
584 |
tccacattaaaacaaagacctactggttagatctctc |
620 |
Q |
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| T |
11771479 |
tccacattaaaacaaagacctactggttagatctctc |
11771515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 11770904 - 11770949
Alignment:
| Q |
8 |
cgtagttcctccagaaaatttatttcgctatcttccacatggcata |
53 |
Q |
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| T |
11770904 |
cgtagttcctccagaaaatttatttcgctatcttccacatgtcata |
11770949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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