View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-6 (Length: 585)
Name: NF5387-Insertion-6
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 8 - 585
Target Start/End: Original strand, 40740795 - 40741372
Alignment:
| Q |
8 |
gcatcattctgaaacagtgtctcaaatgaactatcttcatcctaagaaacttaacttcaaaggttggaaaaatcctcaagcaaaatggggtgattggttt |
107 |
Q |
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| T |
40740795 |
gcatcattccgaaacagtgtctcaaatgaaccatcttcatcctaagaaacttaacttcaaaggttggaaaaatcctcaagcaaaatggggtgattggttt |
40740894 |
T |
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| Q |
108 |
gaaacattaacaggaaaacatggtttcatatggaaccaaacaggtctctgtgatgcccttttgtcttctctatacaattttcctcgcaacccatctttgg |
207 |
Q |
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| T |
40740895 |
gaaacattaacaggaaaacatggtttcatatggaaccaaacaggtctctgtgatgcccttttgtcttctctatacaattttcctcgcaacccatctttgg |
40740994 |
T |
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| Q |
208 |
ttcttgctttagtacaatattggtctccaaaaaccaacacttttgtttttccttggggtgaagcaaccatcacacttgaagatgttatgattctcggtgg |
307 |
Q |
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| T |
40740995 |
ttcttgctttagtacaatattggtctccaaaaaccaacacttttgtttttccttggggtgaagcaaccatcacatttgaagatgttatgattctcggtgg |
40741094 |
T |
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| Q |
308 |
attttcagtccttggtgaacccgtaacactttcgctttcttctgatttgctttcaatcgaagctaaattgatcgagattcgaaggagtatgtcgaaaaac |
407 |
Q |
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| T |
40741095 |
attttcagtccttggtgaaccggtaacactttcgctttcttctgatttgctttcaatcgaagctaaattgatcgagattcgaaggagtatgtcgaaaaac |
40741194 |
T |
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| Q |
408 |
aagtccaaaaaggcagatcataatgcttggttaaagtttttcaaagaggggttagaagcagaaagtgacaaactttatgaaattgagcatgtgggttttc |
507 |
Q |
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| T |
40741195 |
aagtccaaaaaggcagatcataatgcttggttaaagtttttcaaagaggggttagaagcagaaagtgacaaactttttgaaattgagcatgtgggttttc |
40741294 |
T |
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| Q |
508 |
tttgtttatggttatcaaggttcgtttttccttcattttctgattctgttatcgacccgcgtgtttttccaattgcta |
585 |
Q |
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| T |
40741295 |
tttgtttatggttatcaaggtttgtttttccttcattttctgattctgttatcgacccgcgtgtttttccaattgcta |
40741372 |
T |
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