View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5387-Insertion-7 (Length: 487)

Name: NF5387-Insertion-7
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5387-Insertion-7
NF5387-Insertion-7
[»] chr1 (24 HSPs)
chr1 (8-487)||(35262710-35263191)
chr1 (39-484)||(35247995-35248447)
chr1 (279-481)||(35270406-35270610)
chr1 (298-485)||(35276531-35276712)
chr1 (301-487)||(35199926-35200112)
chr1 (294-487)||(35147351-35147535)
chr1 (315-480)||(35224921-35225086)
chr1 (294-487)||(35190359-35190543)
chr1 (315-483)||(35295848-35296016)
chr1 (294-485)||(45525454-45525642)
chr1 (318-462)||(8638909-8639056)
chr1 (383-461)||(35252152-35252230)
chr1 (315-474)||(35219069-35219231)
chr1 (170-231)||(35251966-35252027)
chr1 (383-463)||(35208211-35208289)
chr1 (418-473)||(35212077-35212132)
chr1 (385-483)||(34309427-34309525)
chr1 (418-464)||(35194604-35194650)
chr1 (420-473)||(35476415-35476468)
chr1 (385-450)||(45531643-45531708)
chr1 (418-482)||(35189422-35189486)
chr1 (412-472)||(35205014-35205074)
chr1 (21-84)||(35267328-35267390)
chr1 (341-470)||(35474028-35474156)
[»] chr3 (5 HSPs)
chr3 (429-472)||(23331914-23331957)
chr3 (418-462)||(899766-899810)
chr3 (423-467)||(53924271-53924315)
chr3 (420-482)||(17664560-17664622)
chr3 (420-482)||(19246963-19247025)
[»] chr2 (2 HSPs)
chr2 (429-482)||(33138612-33138665)
chr2 (433-485)||(18558741-18558792)
[»] chr7 (1 HSPs)
chr7 (385-482)||(38631962-38632059)


Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 35262710 - 35263191
Alignment:
Q  8 aagtagacatgaatttttaaatcaccgttacgggttccaaatcaataaaatagcaaattcatattgcatcacaatatatttaatagttgtaacattcaac 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35262710 aagtagacatgaatttttaaatcaccgttaagggttccaaatcaataaaatagcaaattcatattgcatcacaatatatttaatagttgtaacattcaac 35262809  T
Q  108 aggaggcgagtatccacaacgcatgtatcccaatatactgaacagcactaagcaatataaagtgtgtatatactatacgaagaaacagtttggaacaata 207  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35262810 aggaggcgagtatccacgacgcatgtatctcaatatactgaacaacactaagcaatataaagtgtgtatatactatacgaagaaacagtttggaacaata 35262909  T
Q  208 atatatagtatgttgaaaagttgggacttccaactcttgaaacattattctgccaaccaagaca----accccttttgcatagtatagtaaatgctgctt 303  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||  |||||||||||||||||||||||||    
T  35262910 atatatagtatgttgaaaagttgggacttccaactctagaaacattattctgccaaccaagacacaagacccc--ttgcatagtatagtaaatgctgctt 35263007  T
Q  304 aattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcatt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35263008 aattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctctaacaaattcatctggacttcttcatt 35263107  T
Q  404 ttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgc 487  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35263108 ttctatgcctgaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctactgc 35263191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 484
Target Start/End: Original strand, 35247995 - 35248447
Alignment:
Q  39 gggttccaaatcaataaaatagcaaattcatattgcatcacaatatatttaatagttgtaacattcaacag-------gaggcgagtatccacaacgcat 131  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||  ||||||| |||| |||||||       |||||   || |||||||  |     
T  35247995 gggttccaaatcaataaa-tagcaaattcataatgcatcacaatatattatatagttggaacaatcaacagacaacacgaggcagatacccacaacaaag 35248093  T
Q  132 gtatcccaatatactgaacagcactaagcaatataaagtgtgtatatactatacgaagaaacagtttggaacaataatatatagtatgttgaaaagttgg 231  Q
     ||||| | ||||||||| | || |||||||||||||||||| ||||| | ||| |||||| ||||| ||||||||||||||| ||||||||||||||||    
T  35248094 atatccgagtatactgaagaacaataagcaatataaagtgtgaatatattttacaaagaaagagtttagaacaataatatataatatgttgaaaagttgg 35248193  T
Q  232 gacttccaactcttgaaacattattctgccaaccaagaca----accccttttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaattt 327  Q
     |||| ||| |||| |||| || |||||||| ||||||||    |||||  |||||||||  ||| |||| ||||||||||| ||| ||||| |||| ||    
T  35248194 aactt-caaatcttcaaacgttgttctgccatccaagacataagacccc--ttgcatagttcagtgaatgttgcttaattgtattacttaggtctaactt 35248290  T
Q  328 ctattccttcaagaaagagaccactcttccaattaccagcctttatctcc---aacaaattcatctggacttcttcattttctatgcctaaactgaagaa 424  Q
    ||||||||||||  |||||||   | |||   |||||| |||| ||||||   || | |||||||| ||   |||||||||||| ||||||| |||||||    
T  35248291 ctattccttcaaataagagacgtgtattctggttaccatccttcatctccataaaaacattcatcttga---cttcattttctaggcctaaattgaagaa 35248387  T
Q  425 ctcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctac 484  Q
    |||||||||||||||||| ||||||||||||||||||||| ||| || || |||||||||    
T  35248388 ctcccccatctcaatctcaaaccacccatcgcttctcacaatagaactttgcaatcctac 35248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 279 - 481
Target Start/End: Original strand, 35270406 - 35270610
Alignment:
Q  279 ttgcatagtatagtaaatgctgcttaattgtgttat--ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctc 376  Q
    |||||||||  ||| |||| || |||||||||||||  |||||||||| |||||||||||||||||  ||||| ||||||||||||||| ||||| |||     
T  35270406 ttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacctctcttccaattaccaccctttgtctg 35270505  T
Q  377 caacaaattcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttcc 476  Q
     | || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  35270506 tatcacattcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatcacttctcacactaggacgttgc 35270605  T
Q  477 aatcc 481  Q
    |||||    
T  35270606 aatcc 35270610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 298 - 485
Target Start/End: Original strand, 35276531 - 35276712
Alignment:
Q  298 ctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttc 397  Q
    ||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||||||   ||| |||||||||||| || ||||||||| |||||    
T  35276531 ctgcttaatggtgttacttaggcctaatttatatcccttcaagaaagagaccactcttccaa---ccaccctttatctccatcacattcatctgaacttc 35276627  T
Q  398 ttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctact 485  Q
    ||||  ||   ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  35276628 ttcacatt---tgcctgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctact 35276712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 301 - 487
Target Start/End: Original strand, 35199926 - 35200112
Alignment:
Q  301 cttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttc 400  Q
    ||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||| |||||  | | | | |||||   | |||||| || ||||||||    
T  35199926 cttaattgtcttacttaggcctgacttctattccttcaagaaagagaccactcttcgaattataatcatctgtctcctttatattcatttgaacttcttc 35200025  T
Q  401 attttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgc 487  Q
    || ||||  |||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  35200026 atcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactagggcgttgcaatcctactgc 35200112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 294 - 487
Target Start/End: Original strand, 35147351 - 35147535
Alignment:
Q  294 aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctgga 393  Q
    |||| |||||||| || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||      ||| |||||   | ||||||| |||    
T  35147351 aatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta------tttgtctccttaacattcatcagga 35147444  T
Q  394 cttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgc 487  Q
    | ||| ||| ||||| |||| || ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35147445 cgtctccatcttctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctactgc 35147535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 315 - 480
Target Start/End: Original strand, 35224921 - 35225086
Alignment:
Q  315 ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgccta 414  Q
    |||||||||| |||||||||||||| ||||| ||| |||||||||| |||| ||||||| || |  | | |||| ||||||||||||| ||||| ||||     
T  35224921 ttaggcctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcctg 35225020  T
Q  415 aactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatc 480  Q
    || |||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| |||||    
T  35225021 aaatgaagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttgcaatc 35225086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 294 - 487
Target Start/End: Original strand, 35190359 - 35190543
Alignment:
Q  294 aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctgga 393  Q
    |||| |||| ||| || ||| |||||||||| |||||||||||||||||||||||| ||||||||||||      ||| |||||   | |||||| ||||    
T  35190359 aatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaatta------tttgtctccttaacattcatttgga 35190452  T
Q  394 cttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctactgc 487  Q
    |||| ||   ||||| |||| || |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  35190453 cttcatc---ttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacgttgcaatcctactgc 35190543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 483
Target Start/End: Complemental strand, 35296016 - 35295848
Alignment:
Q  315 ttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgccta 414  Q
    |||||||||| |||||||||||||||||| | |||  ||||||  | |||| ||||| | ||||  | | |||| ||||||||||||| | ||| ||||     
T  35296016 ttaggcctaacttctattccttcaagaaataaacctgtcttcccctgaccaccctttgtatccataacactcatttggacttcttcatctactaagcctg 35295917  T
Q  415 aactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatccta 483  Q
    || |||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||    
T  35295916 aattgaagaactctcccatctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 35295848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 294 - 485
Target Start/End: Original strand, 45525454 - 45525642
Alignment:
Q  294 aatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcctttatctccaacaaattcatctgga 393  Q
    |||| ||||||||||| |   |||||||||| |||||||||||||||||||| |   | |||    | ||||||||||||||| |  | | |||||||||    
T  45525454 aatgttgcttaattgtctaccttaggcctaacttctattccttcaagaaagaaattccccttggtctcaccagcctttatctcgataacactcatctgga 45525553  T
Q  394 cttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctact 485  Q
    ||||||||||||| | |||| || ||||   ||| |||||||||||||||||||||||||| |||||||||| ||||||   ||||||||||    
T  45525554 cttcttcattttcaaggcctgaattgaa---ctctcccatctcaatctccaaccacccatcacttctcacaccaggacgcggcaatcctact 45525642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 462
Target Start/End: Original strand, 8638909 - 8639056
Alignment:
Q  318 ggcctaatttctattccttcaagaaagagaccactcttccaatta---ccagcctttatctccaacaa-attcatctggacttcttcattttctatgcct 413  Q
    ||||||| |||||||||||||| ||||| ||| ||||||||| ||   ||| |||||||| |||  || | |||| ||||||||||||| ||||| ||||    
T  8638909 ggcctaacttctattccttcaacaaagaaacctctcttccaagtataaccatcctttatc-ccagtaatactcatttggacttcttcatcttctaagcct 8639007  T
Q  414 aaactgaagaactcccccatctcaatctccaaccacccatcgcttctca 462  Q
     || |||||||||| ||||||||| |||||||||||||||| |||||||    
T  8639008 gaattgaagaactctcccatctcagtctccaaccacccatcacttctca 8639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 35252152 - 35252230
Alignment:
Q  383 attcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctc 461  Q
    |||||| |||| |||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||    
T  35252152 attcatttggatttcttcatattctatgcctaaattgaagaactccccaatctcaatctcaaaccacccatcacttctc 35252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 474
Target Start/End: Original strand, 35219069 - 35219231
Alignment:
Q  315 ttaggcctaatttctattccttcaagaaagagaccactcttccaatta---ccagcctttatctccaacaa-attcatctggacttcttcattttctatg 410  Q
    |||||||||| |||||||||||||| ||||| ||| |||||||||| |   ||| |||||||| |||  || | |||| ||||||||||||| |  || |    
T  35219069 ttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatc-ccagtaatactcatttggacttcttcatctggtaag 35219167  T
Q  411 cctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgtt 474  Q
    ||| || |||||||||| ||||||||| | ||||||||| |||| ||||||| |||||||||||    
T  35219168 cctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 35219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 35251966 - 35252027
Alignment:
Q  170 tgtgtatatactatacgaagaaacagtttggaacaataatatatagtatgttgaaaagttgg 231  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||    
T  35251966 tgtgcatatactttccgaagaaacagtttggaacaataatatatagtatgttgagaagttgg 35252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 35208211 - 35208289
Alignment:
Q  383 attcatctggacttcttcattttctatgcc-taaactgaagaactcccccatctcaatctccaaccacccatcgcttctcac 463  Q
    ||||||||||||||||||   ||||| ||| | || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  35208211 attcatctggacttcttc---ttctaggccatgaattgaagaactccccaatctcaatctccaaccacccatcgcttctcac 35208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 35212077 - 35212132
Alignment:
Q  418 tgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgt 473  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  35212077 tgaagaactctcccatctcaatctccaaccacccatcacttctcacactcggacgt 35212132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 483
Target Start/End: Original strand, 34309427 - 34309525
Alignment:
Q  385 tcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatccta 483  Q
    |||| |||| |||||||| ||| | || | || |||||||||| |||||||||||||||||||| ||||| ||||| ||| ||||||||| ||||||||    
T  34309427 tcatttggatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggacgttgcaatccta 34309525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 35194604 - 35194650
Alignment:
Q  418 tgaagaactcccccatctcaatctccaaccacccatcgcttctcaca 464  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  35194604 tgaagaactcccccatttcaatctccaaccacccatcgcttctcaca 35194650  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 35476415 - 35476468
Alignment:
Q  420 aagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgt 473  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  35476415 aagaactctcccatctcaatctccaaccacccatcacgtctcacactaggacgt 35476468  T

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Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 45531643 - 45531708
Alignment:
Q  385 tcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacc 450  Q
    |||| ||||||||||||||||| | |||| || |||||||||| ||||||||||||||| ||||||    
T  45531643 tcatatggacttcttcattttcaaggcctgaattgaagaactctcccatctcaatctcccaccacc 45531708  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 482
Target Start/End: Original strand, 35189422 - 35189486
Alignment:
Q  418 tgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 482  Q
    ||||||||||||||||  ||||||||||||||| ||| |||||||||| ||||| || |||||||    
T  35189422 tgaagaactcccccattccaatctccaaccacctatcacttctcacacaaggacattgcaatcct 35189486  T

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Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 472
Target Start/End: Original strand, 35205014 - 35205074
Alignment:
Q  412 ctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacg 472  Q
    ||||| |||| || || |||||||||||||||||||||||||| ||||||||| |||||||    
T  35205014 ctaaattgaaaaaatctcccatctcaatctccaaccacccatcacttctcacattaggacg 35205074  T

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Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 35267328 - 35267390
Alignment:
Q  21 tttttaaatcaccgttacgggttccaaatcaataaaatagcaaattcatattgcatcacaatat 84  Q
    ||||| ||||||||||  ||||||||||||||| |||||||||||||||| | |||||||||||    
T  35267328 tttttcaatcaccgttgagggttccaaatcaat-aaatagcaaattcataatacatcacaatat 35267390  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 470
Target Start/End: Original strand, 35474028 - 35474156
Alignment:
Q  341 aaagagaccactcttccaattaccagcctttatctccaacaaattcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatc 440  Q
    ||||| |||||||||||||| |||| |||||||| | |  | | ||| ||| |||||| ||| ||||| ||||||| ||||||  || | |||||||||     
T  35474028 aaagaaaccactcttccaatgaccatcctttatcgcaataacactcagctgaacttctccatcttctaggcctaaattgaagatatctctcatctcaatg 35474127  T
Q  441 tccaaccacccatcgcttctcacactagga 470  Q
    |||||||| || ||| || |||||||||||    
T  35474128 tccaaccatccttcg-ttttcacactagga 35474156  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 472
Target Start/End: Original strand, 23331914 - 23331957
Alignment:
Q  429 cccatctcaatctccaaccacccatcgcttctcacactaggacg 472  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  23331914 cccatctcaatctccaaccacccatcgcttctcacattaggacg 23331957  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 899810 - 899766
Alignment:
Q  418 tgaagaactcccccatctcaatctccaaccacccatcgcttctca 462  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  899810 tgaataactctcccatctcaatctccaaccacccatcgcttctca 899766  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 53924315 - 53924271
Alignment:
Q  423 aactcccccatctcaatctccaaccacccatcgcttctcacacta 467  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  53924315 aactcccccatctcaatctccaaccacccatcgctcctcaaacta 53924271  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 17664622 - 17664560
Alignment:
Q  420 aagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 482  Q
    ||||| || |||||||||||||||||||| ||||| | ||| ||||||||||||| |||||||    
T  17664622 aagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 17664560  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 19247025 - 19246963
Alignment:
Q  420 aagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 482  Q
    ||||| || |||||||||||||||||||| ||||| | ||| ||||||||||||| |||||||    
T  19247025 aagaattctcccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 19246963  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 482
Target Start/End: Complemental strand, 33138665 - 33138612
Alignment:
Q  429 cccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 482  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| | |||||||    
T  33138665 cccatctcaatctccaaccacccatcacttctcacagtaggacgctgcaatcct 33138612  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 485
Target Start/End: Complemental strand, 18558792 - 18558741
Alignment:
Q  433 tctcaatctccaaccacccatcgcttctcacactaggacgttccaatcctact 485  Q
    |||||||||||||||||||||| | |||||||||||||| || ||||||||||    
T  18558792 tctcaatctccaaccacccatcacgtctcacactaggac-ttgcaatcctact 18558741  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 482
Target Start/End: Original strand, 38631962 - 38632059
Alignment:
Q  385 tcatctggacttcttcattttctatgcctaaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttccaatcct 482  Q
    ||||||||| |||||||| ||  | | || || |||||||||| ||||| | ||||||||||||||||||| |||| ||||||| ||||  |||||||    
T  38631962 tcatctggatttcttcatctttaaggtctgaagtgaagaactctcccatatgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 38632059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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