View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-8 (Length: 365)
Name: NF5387-Insertion-8
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 166 - 365
Target Start/End: Original strand, 6307913 - 6308112
Alignment:
| Q |
166 |
tatagagaagtaataaggtacacttgaacatggagagataagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataa |
265 |
Q |
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| T |
6307913 |
tatagagaaataataaggtacacttgaacatggagagataagaaaacgggagtattatattcaagtttcatttcattcctttcccacttttatcatataa |
6308012 |
T |
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| Q |
266 |
tttcttgggtaacctcttctctgaaaacctcaacaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttac |
365 |
Q |
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| T |
6308013 |
tttcttgggtaacctcttctctgaaaacctcaacaattttgtgatcaaatataacccgttgtattcttattagttgagtaactacctgccccacatttac |
6308112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 6307843 - 6307913
Alignment:
| Q |
60 |
ggccatcacttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgattatat |
130 |
Q |
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| T |
6307843 |
ggccatcacttagtaacttccttgaaccattccactaatacctatttagtaggaaccacgtacgattatat |
6307913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 6307791 - 6307820
Alignment:
| Q |
8 |
aagatcagttcctattacttctccatatac |
37 |
Q |
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| T |
6307791 |
aagatcagttcctattacttctccatatac |
6307820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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