View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387-Insertion-9 (Length: 296)
Name: NF5387-Insertion-9
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 33461094 - 33461226
Alignment:
| Q |
7 |
atatagtatccactcgagcaagtaagtatatgcactcttctcgacatgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtgccgga |
106 |
Q |
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| T |
33461094 |
atatagtatccactcgagcaagt----atatgcactcttctcgacatgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtgccgga |
33461189 |
T |
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| Q |
107 |
agctcgtgaatataatcaataatgtcaagtggtatca |
143 |
Q |
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| T |
33461190 |
agctggtgaatataaccaataatgtcaagtggtatca |
33461226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 296
Target Start/End: Original strand, 33462192 - 33462339
Alignment:
| Q |
150 |
caaagccttacaagttccacctatcatcatagagcatgtccctcaaacatatatctgaatcactaatattaacaaagaaaatg--ataaatattacaaaa |
247 |
Q |
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| T |
33462192 |
caaagccttacaagttccacctaccatcatacaacatgtccctcaagcatatatctgaatcactaatgttaacaaagaaaatgatataagtattacaaaa |
33462291 |
T |
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| Q |
248 |
acatggnnnnnnncgaaatacacgaaagtgtaattaagtgcatttgcta |
296 |
Q |
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| T |
33462292 |
acttgg-aaaaaacgaaatacacgaaagtgtaattcagtgcatttgcta |
33462339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 19156957 - 19157006
Alignment:
| Q |
52 |
atgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtg |
101 |
Q |
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| T |
19156957 |
atgcttccaagtccatgcatcttgaaggcgtaaattcaagttattaggtg |
19157006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 23589134 - 23589064
Alignment:
| Q |
50 |
acatgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtgccggaagctcgtgaatata |
120 |
Q |
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| T |
23589134 |
acattcttccaagtccatgcatcttggagtcgtacatccaagttattaggagctggaagctgatgaatata |
23589064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 12561454 - 12561333
Alignment:
| Q |
51 |
catgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtgccggaagctcgtgaatataatcaataatgtcaagtggtatcatggttgc |
150 |
Q |
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| T |
12561454 |
catgcctccaagtccatacatcttgatgtcgtacttccaagttattaggagctggaagctgatgaatataacgaacaatatcggttggtatcatagcggc |
12561355 |
T |
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| Q |
151 |
aaagccttacaagttccaccta |
172 |
Q |
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| T |
12561354 |
aaatccttgcaagttccaccta |
12561333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 16825041 - 16825137
Alignment:
| Q |
51 |
catgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtgccggaagctcgtgaatataatcaataatgtcaagtggtatcatggt |
147 |
Q |
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| T |
16825041 |
catgcctccaagtccacgcatcttgaaatcgtacatccaaattattaggagctggaagctgatgaatataatgaacaatgtcggttggtatcatggt |
16825137 |
T |
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