View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5387_high_1 (Length: 830)

Name: NF5387_high_1
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5387_high_1
NF5387_high_1
[»] chr8 (1 HSPs)
chr8 (19-817)||(16691163-16691961)


Alignment Details
Target: chr8 (Bit Score: 709; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 19 - 817
Target Start/End: Original strand, 16691163 - 16691961
Alignment:
Q  19 gtcttttcttttattaatcgatgcaaggaaggatacttggttaacatccttgaaaaaacaggnnnnnnnnntttacgaactttttcatgaattaaaatca 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  16691163 gtcttttcttttataaatcgatgcaaggaaggatacttggttaacatccttgaaaaaacaggaaaaaaaattttacgaactttttcatgaattaaaatca 16691262  T
Q  119 gaaatcatgacacacgcgcgagcgtgcagagataaagagagcataccccaaaacatacatatccggctcatttcgaacctgaagaaaatcactcagatca 218  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16691263 aaaatcatgacacacacgcgagcgtgcagagataaagagagcataccccaaaacatacatatccggctcatttcgaacctgaagaaaatcactcagatca 16691362  T
Q  219 aggttcccacttgggcattgacctccaacgttccatgttgcagcgaaaacactatgattcaaagcacaggcaaataactattatagttaatatagtcaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16691363 aggttcccacttgggcattgacctccaacgttccatgttgcagcgaaaacactatgattcaaagcacaggcaaataactattatagttaatattgtcaca 16691462  T
Q  319 gatattttaacagcatcaagttataaagaaaatcttttaattacttgaaattctgaactgcttcacaagaagacatggaaggtactgagccttgattttg 418  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16691463 gatattttaacagcatgaagttataaagaaaatcttttaattacttgaaattctgaactgcttcacaagaagacatggaaggtactgagccttgattttg 16691562  T
Q  419 gatggatgtatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaaaagagtggctgaaaaatgtgcagtataaggtttatt 518  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  16691563 gatggatggatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaaaagagtggttgaaaaatgtgtagtataaggtttatt 16691662  T
Q  519 ctattcttgaacatcctccaccagtaacaaaagaactttcatacagtaaaagtaaagagtatattgtggataatgaagaagaacaaagaaagataagaaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16691663 ctattcttgaacatcctccaccagtaacaaaagaactttcatacagtaaaagtaaagagtatattgtggataatgaagaagaacaaagaaagataagaaa 16691762  T
Q  619 ttgtattttcatcttaaatgttaaaatattattatattctgcaatttggatcaaatcactagatgttccaccttatcttattactctacatgt-aaatca 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16691763 ttgtattttcatcttaaatgttaaaatattattatattctgcaatttggatcaaatcactagatgttccaccttatcttattactctacatgtaaaatca 16691862  T
Q  718 aactatgccatcataacattaaatttttcttttgccaattttccaaatattcttcttaaaagaataaaactagaatgaaaaattctctcagccacaggtt 817  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||    
T  16691863 aactatgccatcataacatt-aatttttcttttgccaattttccaaatattcttcctaaaagaataaaactagaataaataattctctcaaccacaggtt 16691961  T

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