View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_high_10 (Length: 375)
Name: NF5387_high_10
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 11770909 - 11770549
Alignment:
| Q |
19 |
actacggtcatagaaaaattgtgaagaaacctatgaaaaagaccttgctctaaacatttttaccaaaaacttgnnnnnnnataaatccaacatcattaac |
118 |
Q |
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| T |
11770909 |
actacggtcatagaaaaattgtgaagaaacctatgaaaaagaccttgctctaaacatttttaccaaaaacttgtttttttataaatccaacatcattaac |
11770810 |
T |
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| Q |
119 |
tgatctgcctagcctagc-----aatccccacccccgtccctacaccgagtgatacaaggcttagttgttgtggacatgtttaatgatatacctccagaa |
213 |
Q |
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| T |
11770809 |
tgatctgcctagcctagcctagcaatccccacccccgtccctacaccgagtgatacaaggcttagttgttgtggacatgtttaatgatatacctccagaa |
11770710 |
T |
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| Q |
214 |
cctcattttgaaagaaacggggaccttccttgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacctacagaacattaaa |
313 |
Q |
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| T |
11770709 |
cctcattttgaaagaaacggggaccttccttgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacctacagaacattaaa |
11770610 |
T |
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| Q |
314 |
aatttgttcaggctctttcaaaattactaagtatacattatatgaagtataatctacccac |
374 |
Q |
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| T |
11770609 |
aatttgttcaggctctttcaaaattactaagtatacattatatgaagtacaaactacccac |
11770549 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 38155349 - 38155427
Alignment:
| Q |
222 |
tgaaagaaacggggaccttccttgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacct |
300 |
Q |
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| T |
38155349 |
tgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagcttcaccaagataaccaacct |
38155427 |
T |
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